Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK1Q99986 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK1Q99986 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.24■□□□□ 0.19
VRK1Q99986 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
VRK1Q99986 AL512604.3-201ENST00000569583 964 ntBASIC16.24■□□□□ 0.19
VRK1Q99986 AC087388.1-201ENST00000571370 1112 ntBASIC16.24■□□□□ 0.19
VRK1Q99986 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.24■□□□□ 0.19
VRK1Q99986 NTF6B-201ENST00000591913 560 ntBASIC16.24■□□□□ 0.19
VRK1Q99986 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.24■□□□□ 0.19
VRK1Q99986 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.24■□□□□ 0.19
VRK1Q99986 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.24■□□□□ 0.19
VRK1Q99986 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.24■□□□□ 0.19
VRK1Q99986 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK1Q99986 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK1Q99986 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
VRK1Q99986 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK1Q99986 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.24■□□□□ 0.19
VRK1Q99986 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VRK1Q99986 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC16.23■□□□□ 0.19
VRK1Q99986 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK1Q99986 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
VRK1Q99986 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK1Q99986 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC16.23■□□□□ 0.19
VRK1Q99986 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.23■□□□□ 0.19
VRK1Q99986 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.23■□□□□ 0.19
VRK1Q99986 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VRK1Q99986 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
VRK1Q99986 LINC01238-205ENST00000567549 1107 ntBASIC16.23■□□□□ 0.19
VRK1Q99986 AL023803.3-201ENST00000615559 522 ntBASIC16.23■□□□□ 0.19
VRK1Q99986 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.23■□□□□ 0.19
VRK1Q99986 AC006011.2-201ENST00000621313 1158 ntBASIC16.23■□□□□ 0.19
VRK1Q99986 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.23■□□□□ 0.19
VRK1Q99986 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VRK1Q99986 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK1Q99986 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK1Q99986 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC16.23■□□□□ 0.19
VRK1Q99986 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
VRK1Q99986 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC16.23■□□□□ 0.19
VRK1Q99986 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VRK1Q99986 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
VRK1Q99986 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
VRK1Q99986 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.22■□□□□ 0.19
VRK1Q99986 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.22■□□□□ 0.19
VRK1Q99986 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.22■□□□□ 0.19
VRK1Q99986 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.22■□□□□ 0.19
VRK1Q99986 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.22■□□□□ 0.19
VRK1Q99986 AP003041.3-201ENST00000527151 707 ntBASIC16.22■□□□□ 0.19
VRK1Q99986 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 AC139887.4-201ENST00000607877 719 ntBASIC16.22■□□□□ 0.19
VRK1Q99986 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
VRK1Q99986 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
VRK1Q99986 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
VRK1Q99986 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC16.22■□□□□ 0.19
VRK1Q99986 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VRK1Q99986 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
VRK1Q99986 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC16.21■□□□□ 0.19
VRK1Q99986 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VRK1Q99986 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VRK1Q99986 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK1Q99986 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC16.21■□□□□ 0.19
VRK1Q99986 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK1Q99986 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK1Q99986 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VRK1Q99986 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VRK1Q99986 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK1Q99986 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK1Q99986 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VRK1Q99986 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VRK1Q99986 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
VRK1Q99986 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.21■□□□□ 0.19
VRK1Q99986 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK1Q99986 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
VRK1Q99986 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
VRK1Q99986 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.21■□□□□ 0.19
VRK1Q99986 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VRK1Q99986 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.21■□□□□ 0.19
VRK1Q99986 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
VRK1Q99986 WWOX-216ENST00000569818 525 ntBASIC16.21■□□□□ 0.19
VRK1Q99986 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.21■□□□□ 0.19
VRK1Q99986 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.21■□□□□ 0.19
VRK1Q99986 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.21■□□□□ 0.19
VRK1Q99986 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.21■□□□□ 0.19
VRK1Q99986 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VRK1Q99986 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms