Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 KRT89P-201ENST00000620027 1478 ntBASIC17.02■□□□□ 0.32
CTHRC1Q96CG8 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CTHRC1Q96CG8 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTHRC1Q96CG8 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.02■□□□□ 0.32
CTHRC1Q96CG8 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.02■□□□□ 0.32
CTHRC1Q96CG8 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CTHRC1Q96CG8 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CTHRC1Q96CG8 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTHRC1Q96CG8 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.02■□□□□ 0.32
CTHRC1Q96CG8 AC008687.5-201ENST00000593746 558 ntBASIC17.02■□□□□ 0.32
CTHRC1Q96CG8 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
CTHRC1Q96CG8 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.02■□□□□ 0.32
CTHRC1Q96CG8 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
CTHRC1Q96CG8 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
CTHRC1Q96CG8 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.02■□□□□ 0.31
CTHRC1Q96CG8 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CTHRC1Q96CG8 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CTHRC1Q96CG8 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CTHRC1Q96CG8 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
CTHRC1Q96CG8 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CTHRC1Q96CG8 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 AL096828.2-201ENST00000567259 1965 ntBASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 AC093010.1-201ENST00000473625 1624 ntBASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 HBZP1-201ENST00000354915 429 ntBASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 AL359075.1-203ENST00000462729 1002 ntBASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 AC092597.1-201ENST00000487352 616 ntBASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.01■□□□□ 0.31
CTHRC1Q96CG8 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17■□□□□ 0.31
CTHRC1Q96CG8 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17■□□□□ 0.31
CTHRC1Q96CG8 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17■□□□□ 0.31
CTHRC1Q96CG8 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTHRC1Q96CG8 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTHRC1Q96CG8 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTHRC1Q96CG8 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.99■□□□□ 0.31
CTHRC1Q96CG8 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CTHRC1Q96CG8 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CTHRC1Q96CG8 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CTHRC1Q96CG8 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms