Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF139Q8WU17 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
RNF139Q8WU17 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
RNF139Q8WU17 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF139Q8WU17 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.29■□□□□ 0.68
RNF139Q8WU17 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.29■□□□□ 0.68
RNF139Q8WU17 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
RNF139Q8WU17 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF139Q8WU17 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF139Q8WU17 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
RNF139Q8WU17 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
RNF139Q8WU17 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF139Q8WU17 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF139Q8WU17 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.29■□□□□ 0.68
RNF139Q8WU17 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF139Q8WU17 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
RNF139Q8WU17 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF139Q8WU17 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF139Q8WU17 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF139Q8WU17 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RNF139Q8WU17 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RNF139Q8WU17 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 AC092597.1-201ENST00000487352 616 ntBASIC19.28■□□□□ 0.68
RNF139Q8WU17 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 AL163051.1-201ENST00000569214 1512 ntBASIC19.28■□□□□ 0.68
RNF139Q8WU17 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 AC126763.1-201ENST00000552015 2118 ntBASIC19.28■□□□□ 0.68
RNF139Q8WU17 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.28■□□□□ 0.68
RNF139Q8WU17 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RNF139Q8WU17 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 AC005082.1-201ENST00000413042 2259 ntBASIC19.27■□□□□ 0.68
RNF139Q8WU17 HTR7P1-202ENST00000624664 4411 ntBASIC19.27■□□□□ 0.68
RNF139Q8WU17 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF139Q8WU17 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
RNF139Q8WU17 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.27■□□□□ 0.68
RNF139Q8WU17 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF139Q8WU17 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.27■□□□□ 0.68
RNF139Q8WU17 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.27■□□□□ 0.68
RNF139Q8WU17 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC19.27■□□□□ 0.68
RNF139Q8WU17 ZNF444P1-201ENST00000559497 298 ntBASIC19.27■□□□□ 0.68
RNF139Q8WU17 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC19.27■□□□□ 0.68
RNF139Q8WU17 AL121956.5-201ENST00000625261 221 ntBASIC19.27■□□□□ 0.68
RNF139Q8WU17 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.27■□□□□ 0.68
RNF139Q8WU17 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RNF139Q8WU17 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.27■□□□□ 0.67
RNF139Q8WU17 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF139Q8WU17 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.67
RNF139Q8WU17 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RNF139Q8WU17 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF139Q8WU17 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.26■□□□□ 0.67
RNF139Q8WU17 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF139Q8WU17 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF139Q8WU17 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF139Q8WU17 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF139Q8WU17 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.26■□□□□ 0.67
RNF139Q8WU17 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF139Q8WU17 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms