Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SHKBP1Q8TBC3 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SHKBP1Q8TBC3 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 AL357033.4-201ENST00000617703 1807 ntBASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 IGHGP-201ENST00000390555 1178 ntBASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 AC012615.1-201ENST00000565797 1299 ntBASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.28■□□□□ 0.68
SHKBP1Q8TBC3 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 HEIH-201ENST00000623091 1652 ntBASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 KRT8P50-201ENST00000562022 1438 ntBASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 AC024563.2-201ENST00000603282 481 ntBASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 IGHV3-41-201ENST00000613121 348 ntBASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SHKBP1Q8TBC3 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SHKBP1Q8TBC3 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SHKBP1Q8TBC3 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SHKBP1Q8TBC3 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.27■□□□□ 0.67
SHKBP1Q8TBC3 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 FAAHP1-202ENST00000446499 1238 ntBASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 FOSL1P1-201ENST00000511041 816 ntBASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SHKBP1Q8TBC3 MTMR9LP-203ENST00000426597 1545 ntBASIC19.25■□□□□ 0.67
SHKBP1Q8TBC3 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
SHKBP1Q8TBC3 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHKBP1Q8TBC3 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SHKBP1Q8TBC3 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SHKBP1Q8TBC3 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SHKBP1Q8TBC3 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.25■□□□□ 0.67
SHKBP1Q8TBC3 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms