Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 SNORA78-201ENST00000459373 127 ntBASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
DEPDC4Q8N2C3 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 MIR4785-201ENST00000585005 73 ntBASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 AL049637.2-201ENST00000641778 930 ntBASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
DEPDC4Q8N2C3 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 HTR7P1-201ENST00000538670 1336 ntBASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 SIRPAP1-201ENST00000448467 1770 ntBASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
DEPDC4Q8N2C3 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
DEPDC4Q8N2C3 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
DEPDC4Q8N2C3 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
DEPDC4Q8N2C3 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
DEPDC4Q8N2C3 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.09■□□□□ 0.33
DEPDC4Q8N2C3 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
DEPDC4Q8N2C3 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
DEPDC4Q8N2C3 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
DEPDC4Q8N2C3 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms