Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 AGPS-202ENST00000409888 815 ntTSL 4 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 KRT16P6-202ENST00000425692 1426 ntBASIC11.48□□□□□ -0.57
LINC00643Q86TS7 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 AC006116.8-202ENST00000587620 1550 ntBASIC11.48□□□□□ -0.57
LINC00643Q86TS7 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 AC093677.2-201ENST00000600169 1863 ntBASIC11.48□□□□□ -0.57
LINC00643Q86TS7 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
LINC00643Q86TS7 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 AL513523.2-202ENST00000427283 2040 ntBASIC11.47□□□□□ -0.57
LINC00643Q86TS7 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
LINC00643Q86TS7 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 SBF1P1-201ENST00000444527 5631 ntBASIC11.46□□□□□ -0.57
LINC00643Q86TS7 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
LINC00643Q86TS7 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms