Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 NOC2LP1-202ENST00000452600 2235 ntBASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 CCR12P-201ENST00000446203 998 ntBASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 AL023803.3-201ENST00000615559 522 ntBASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 KRT8P50-201ENST00000562022 1438 ntBASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC40Q4G0X9 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 AL353719.1-201ENST00000566847 864 ntBASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC40Q4G0X9 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 C2orf69P3-201ENST00000565542 1120 ntBASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC40Q4G0X9 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 AC099343.3-201ENST00000605834 2503 ntBASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 AC116562.4-202ENST00000641738 218 ntBASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC40Q4G0X9 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms