Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL049812.1-201ENST00000432563 2267 ntBASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 AC112482.1-201ENST00000492080 688 ntBASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 MIR3180-4-201ENST00000582223 153 ntBASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 AL138831.2-201ENST00000606564 490 ntBASIC22.43■■□□□ 1.18
CCDC88AQ3V6T2 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 KRT18P3-201ENST00000451602 1288 ntBASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 FAM215A-202ENST00000632077 792 ntBASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CCDC88AQ3V6T2 DNAJB3-201ENST00000446806 729 ntBASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 AC113404.2-201ENST00000507884 177 ntBASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC22.41■■□□□ 1.18
CCDC88AQ3V6T2 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 AL357033.4-201ENST00000617703 1807 ntBASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 ALG1L5P-201ENST00000482043 771 ntBASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 ANKRD20A8P-203ENST00000641373 517 ntBASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
CCDC88AQ3V6T2 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
CCDC88AQ3V6T2 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.18
CCDC88AQ3V6T2 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CCDC88AQ3V6T2 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CCDC88AQ3V6T2 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC22.39■■□□□ 1.18
CCDC88AQ3V6T2 RAB17-203ENST00000409576 466 ntTSL 3 BASIC22.39■■□□□ 1.18
CCDC88AQ3V6T2 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC22.39■■□□□ 1.18
CCDC88AQ3V6T2 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC22.39■■□□□ 1.18
CCDC88AQ3V6T2 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC22.39■■□□□ 1.18
CCDC88AQ3V6T2 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC88AQ3V6T2 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC22.39■■□□□ 1.17
CCDC88AQ3V6T2 KRT8P50-201ENST00000562022 1438 ntBASIC22.39■■□□□ 1.17
CCDC88AQ3V6T2 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC22.39■■□□□ 1.17
CCDC88AQ3V6T2 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC88AQ3V6T2 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC22.39■■□□□ 1.17
CCDC88AQ3V6T2 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC22.39■■□□□ 1.17
CCDC88AQ3V6T2 PMP22-202ENST00000395936 816 ntTSL 3 BASIC22.39■■□□□ 1.17
CCDC88AQ3V6T2 AC132008.2-207ENST00000454517 770 ntBASIC22.39■■□□□ 1.17
CCDC88AQ3V6T2 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.17
CCDC88AQ3V6T2 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC22.39■■□□□ 1.17
CCDC88AQ3V6T2 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC22.39■■□□□ 1.17
CCDC88AQ3V6T2 REEP1-209ENST00000541910 969 ntTSL 2 BASIC22.39■■□□□ 1.17
CCDC88AQ3V6T2 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC22.39■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms