Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF4P78317 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF4P78317 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RNF4P78317 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.99■□□□□ 0.31
RNF4P78317 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.99■□□□□ 0.31
RNF4P78317 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF4P78317 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RNF4P78317 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.99■□□□□ 0.31
RNF4P78317 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.99■□□□□ 0.31
RNF4P78317 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RNF4P78317 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
RNF4P78317 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.99■□□□□ 0.31
RNF4P78317 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.99■□□□□ 0.31
RNF4P78317 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RNF4P78317 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.99■□□□□ 0.31
RNF4P78317 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.99■□□□□ 0.31
RNF4P78317 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF4P78317 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF4P78317 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF4P78317 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.99■□□□□ 0.31
RNF4P78317 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
RNF4P78317 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.99■□□□□ 0.31
RNF4P78317 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.99■□□□□ 0.31
RNF4P78317 AL162741.1-201ENST00000565563 1558 ntBASIC16.98■□□□□ 0.31
RNF4P78317 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF4P78317 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
RNF4P78317 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF4P78317 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF4P78317 AC004408.2-201ENST00000623613 2777 ntBASIC16.98■□□□□ 0.31
RNF4P78317 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF4P78317 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF4P78317 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RNF4P78317 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RNF4P78317 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
RNF4P78317 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF4P78317 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RNF4P78317 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RNF4P78317 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC16.98■□□□□ 0.31
RNF4P78317 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.98■□□□□ 0.31
RNF4P78317 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.98■□□□□ 0.31
RNF4P78317 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.98■□□□□ 0.31
RNF4P78317 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.98■□□□□ 0.31
RNF4P78317 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF4P78317 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.98■□□□□ 0.31
RNF4P78317 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF4P78317 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
RNF4P78317 AC024563.2-201ENST00000603282 481 ntBASIC16.98■□□□□ 0.31
RNF4P78317 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.98■□□□□ 0.31
RNF4P78317 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RNF4P78317 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.98■□□□□ 0.31
RNF4P78317 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.98■□□□□ 0.31
RNF4P78317 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF4P78317 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RNF4P78317 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF4P78317 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
RNF4P78317 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
RNF4P78317 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.97■□□□□ 0.31
RNF4P78317 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.97■□□□□ 0.31
RNF4P78317 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
RNF4P78317 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.97■□□□□ 0.31
RNF4P78317 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.97■□□□□ 0.31
RNF4P78317 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.97■□□□□ 0.31
RNF4P78317 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 WIZP1-201ENST00000531444 2299 ntBASIC16.97■□□□□ 0.31
RNF4P78317 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.97■□□□□ 0.31
RNF4P78317 KRT18P48-201ENST00000434763 852 ntBASIC16.97■□□□□ 0.31
RNF4P78317 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.97■□□□□ 0.31
RNF4P78317 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.97■□□□□ 0.31
RNF4P78317 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.97■□□□□ 0.31
RNF4P78317 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
RNF4P78317 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
RNF4P78317 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF4P78317 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.96■□□□□ 0.31
RNF4P78317 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
RNF4P78317 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RNF4P78317 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.96■□□□□ 0.31
RNF4P78317 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
RNF4P78317 AC073592.3-201ENST00000625118 1834 ntBASIC16.96■□□□□ 0.31
RNF4P78317 ADK-206ENST00000541550 2222 ntTSL 2 BASIC16.96■□□□□ 0.31
RNF4P78317 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.96■□□□□ 0.31
RNF4P78317 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
RNF4P78317 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RNF4P78317 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
RNF4P78317 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
RNF4P78317 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
RNF4P78317 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms