Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 EMD-201ENST00000369835 966 ntTSL 3 BASIC21.68■■□□□ 1.06
RHBDL3P58872 AP000347.1-202ENST00000435868 847 ntBASIC21.68■■□□□ 1.06
RHBDL3P58872 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.68■■□□□ 1.06
RHBDL3P58872 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC21.68■■□□□ 1.06
RHBDL3P58872 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC21.68■■□□□ 1.06
RHBDL3P58872 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC21.68■■□□□ 1.06
RHBDL3P58872 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.68■■□□□ 1.06
RHBDL3P58872 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RHBDL3P58872 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC21.68■■□□□ 1.06
RHBDL3P58872 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
RHBDL3P58872 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RHBDL3P58872 CALM3-211ENST00000598871 561 ntTSL 4 BASIC21.68■■□□□ 1.06
RHBDL3P58872 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC21.68■■□□□ 1.06
RHBDL3P58872 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
RHBDL3P58872 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RHBDL3P58872 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.68■■□□□ 1.06
RHBDL3P58872 AL031598.1-201ENST00000561511 1773 ntBASIC21.68■■□□□ 1.06
RHBDL3P58872 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.68■■□□□ 1.06
RHBDL3P58872 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.68■■□□□ 1.06
RHBDL3P58872 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RHBDL3P58872 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RHBDL3P58872 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.68■■□□□ 1.06
RHBDL3P58872 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RHBDL3P58872 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
RHBDL3P58872 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.67■■□□□ 1.06
RHBDL3P58872 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
RHBDL3P58872 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
RHBDL3P58872 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.67■■□□□ 1.06
RHBDL3P58872 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RHBDL3P58872 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RHBDL3P58872 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RHBDL3P58872 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RHBDL3P58872 MRPL3P1-201ENST00000400109 1033 ntBASIC21.67■■□□□ 1.06
RHBDL3P58872 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.67■■□□□ 1.06
RHBDL3P58872 MIR5100-201ENST00000579544 119 ntBASIC21.67■■□□□ 1.06
RHBDL3P58872 AC009154.2-201ENST00000621177 724 ntBASIC21.67■■□□□ 1.06
RHBDL3P58872 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RHBDL3P58872 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RHBDL3P58872 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RHBDL3P58872 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RHBDL3P58872 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RHBDL3P58872 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC21.66■■□□□ 1.06
RHBDL3P58872 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.66■■□□□ 1.06
RHBDL3P58872 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RHBDL3P58872 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RHBDL3P58872 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RHBDL3P58872 SAPCD2P3-201ENST00000455031 850 ntBASIC21.66■■□□□ 1.06
RHBDL3P58872 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC21.66■■□□□ 1.06
RHBDL3P58872 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC21.66■■□□□ 1.06
RHBDL3P58872 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.66■■□□□ 1.06
RHBDL3P58872 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RHBDL3P58872 AC114341.1-201ENST00000618070 349 ntBASIC21.66■■□□□ 1.06
RHBDL3P58872 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RHBDL3P58872 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC21.66■■□□□ 1.06
RHBDL3P58872 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.66■■□□□ 1.06
RHBDL3P58872 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RHBDL3P58872 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.66■■□□□ 1.06
RHBDL3P58872 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RHBDL3P58872 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RHBDL3P58872 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC21.65■■□□□ 1.06
RHBDL3P58872 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RHBDL3P58872 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
RHBDL3P58872 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.65■■□□□ 1.06
RHBDL3P58872 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RHBDL3P58872 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RHBDL3P58872 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
RHBDL3P58872 MTCL1P1-201ENST00000446207 792 ntBASIC21.65■■□□□ 1.06
RHBDL3P58872 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
RHBDL3P58872 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC21.65■■□□□ 1.06
RHBDL3P58872 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC21.65■■□□□ 1.06
RHBDL3P58872 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC21.65■■□□□ 1.06
RHBDL3P58872 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
RHBDL3P58872 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
RHBDL3P58872 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
RHBDL3P58872 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
RHBDL3P58872 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
RHBDL3P58872 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RHBDL3P58872 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RHBDL3P58872 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
RHBDL3P58872 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
RHBDL3P58872 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC21.64■■□□□ 1.05
RHBDL3P58872 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.64■■□□□ 1.05
RHBDL3P58872 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RHBDL3P58872 AC096582.2-201ENST00000510860 516 ntBASIC21.64■■□□□ 1.05
RHBDL3P58872 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21.64■■□□□ 1.05
RHBDL3P58872 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RHBDL3P58872 TP73-AS1-207ENST00000624167 988 ntBASIC21.64■■□□□ 1.05
RHBDL3P58872 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.64■■□□□ 1.05
RHBDL3P58872 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
RHBDL3P58872 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RHBDL3P58872 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RHBDL3P58872 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RHBDL3P58872 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RHBDL3P58872 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.64■■□□□ 1.05
RHBDL3P58872 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.63■■□□□ 1.05
RHBDL3P58872 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RHBDL3P58872 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RHBDL3P58872 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
RHBDL3P58872 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RHBDL3P58872 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms