Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.62■□□□□ 0.73
COL4A4P53420 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.62■□□□□ 0.73
COL4A4P53420 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A4P53420 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
COL4A4P53420 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
COL4A4P53420 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A4P53420 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.62■□□□□ 0.73
COL4A4P53420 AP001160.2-201ENST00000596071 487 ntBASIC19.62■□□□□ 0.73
COL4A4P53420 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.62■□□□□ 0.73
COL4A4P53420 AP001269.4-201ENST00000609611 512 ntBASIC19.62■□□□□ 0.73
COL4A4P53420 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL4A4P53420 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A4P53420 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A4P53420 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A4P53420 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A4P53420 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
COL4A4P53420 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.61■□□□□ 0.73
COL4A4P53420 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.61■□□□□ 0.73
COL4A4P53420 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
COL4A4P53420 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
COL4A4P53420 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.61■□□□□ 0.73
COL4A4P53420 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.61■□□□□ 0.73
COL4A4P53420 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC19.61■□□□□ 0.73
COL4A4P53420 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.61■□□□□ 0.73
COL4A4P53420 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.61■□□□□ 0.73
COL4A4P53420 AL591684.3-201ENST00000605187 298 ntBASIC19.61■□□□□ 0.73
COL4A4P53420 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A4P53420 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.61■□□□□ 0.73
COL4A4P53420 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A4P53420 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.61■□□□□ 0.73
COL4A4P53420 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A4P53420 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A4P53420 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A4P53420 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
COL4A4P53420 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL4A4P53420 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A4P53420 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A4P53420 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A4P53420 BX323043.1-201ENST00000641006 1765 ntBASIC19.6■□□□□ 0.73
COL4A4P53420 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A4P53420 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A4P53420 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.6■□□□□ 0.73
COL4A4P53420 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A4P53420 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A4P53420 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A4P53420 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.6■□□□□ 0.73
COL4A4P53420 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A4P53420 KRT18P41-201ENST00000518924 1277 ntBASIC19.6■□□□□ 0.73
COL4A4P53420 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.6■□□□□ 0.73
COL4A4P53420 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.6■□□□□ 0.73
COL4A4P53420 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A4P53420 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A4P53420 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
COL4A4P53420 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL4A4P53420 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.6■□□□□ 0.73
COL4A4P53420 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A4P53420 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A4P53420 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
COL4A4P53420 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A4P53420 POM121L3P-201ENST00000419331 1163 ntBASIC19.59■□□□□ 0.73
COL4A4P53420 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A4P53420 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A4P53420 AL356488.2-201ENST00000602755 427 ntBASIC19.59■□□□□ 0.73
COL4A4P53420 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A4P53420 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A4P53420 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.59■□□□□ 0.73
COL4A4P53420 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A4P53420 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.59■□□□□ 0.73
COL4A4P53420 CROCCP3-202ENST00000420820 1947 ntBASIC19.59■□□□□ 0.73
COL4A4P53420 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A4P53420 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
COL4A4P53420 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.59■□□□□ 0.73
COL4A4P53420 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
COL4A4P53420 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A4P53420 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A4P53420 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.59■□□□□ 0.73
COL4A4P53420 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.59■□□□□ 0.73
COL4A4P53420 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.59■□□□□ 0.73
COL4A4P53420 MIR3180-4-201ENST00000582223 153 ntBASIC19.59■□□□□ 0.73
COL4A4P53420 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.59■□□□□ 0.73
COL4A4P53420 FAM197Y3-203ENST00000618346 717 ntBASIC19.59■□□□□ 0.73
COL4A4P53420 FAM215A-202ENST00000632077 792 ntBASIC19.59■□□□□ 0.73
COL4A4P53420 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL4A4P53420 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A4P53420 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A4P53420 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A4P53420 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.58■□□□□ 0.73
COL4A4P53420 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.73
COL4A4P53420 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL4A4P53420 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.58■□□□□ 0.73
COL4A4P53420 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.58■□□□□ 0.73
COL4A4P53420 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A4P53420 RBM17P3-201ENST00000417687 1192 ntBASIC19.58■□□□□ 0.72
COL4A4P53420 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A4P53420 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.58■□□□□ 0.72
COL4A4P53420 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A4P53420 AC012640.2-201ENST00000561606 901 ntBASIC19.58■□□□□ 0.72
COL4A4P53420 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A4P53420 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
COL4A4P53420 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms