Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CR769767.2-201ENST00000622735 460 ntBASIC18.96■□□□□ 0.63
NEK3P51956 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.96■□□□□ 0.63
NEK3P51956 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
NEK3P51956 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
NEK3P51956 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
NEK3P51956 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.95■□□□□ 0.62
NEK3P51956 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NEK3P51956 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
NEK3P51956 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
NEK3P51956 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NEK3P51956 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.95■□□□□ 0.62
NEK3P51956 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NEK3P51956 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
NEK3P51956 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NEK3P51956 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
NEK3P51956 FAM8A6P-201ENST00000407496 1135 ntBASIC18.95■□□□□ 0.62
NEK3P51956 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.95■□□□□ 0.62
NEK3P51956 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.95■□□□□ 0.62
NEK3P51956 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NEK3P51956 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.95■□□□□ 0.62
NEK3P51956 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.95■□□□□ 0.62
NEK3P51956 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.95■□□□□ 0.62
NEK3P51956 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.95■□□□□ 0.62
NEK3P51956 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NEK3P51956 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NEK3P51956 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NEK3P51956 AC073592.3-201ENST00000625118 1834 ntBASIC18.95■□□□□ 0.62
NEK3P51956 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.95■□□□□ 0.62
NEK3P51956 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
NEK3P51956 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NEK3P51956 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
NEK3P51956 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
NEK3P51956 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.94■□□□□ 0.62
NEK3P51956 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.94■□□□□ 0.62
NEK3P51956 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.94■□□□□ 0.62
NEK3P51956 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NEK3P51956 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NEK3P51956 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NEK3P51956 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
NEK3P51956 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.94■□□□□ 0.62
NEK3P51956 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.94■□□□□ 0.62
NEK3P51956 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
NEK3P51956 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
NEK3P51956 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.94■□□□□ 0.62
NEK3P51956 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
NEK3P51956 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.94■□□□□ 0.62
NEK3P51956 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NEK3P51956 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.94■□□□□ 0.62
NEK3P51956 AL023284.2-201ENST00000405850 579 ntBASIC18.94■□□□□ 0.62
NEK3P51956 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.94■□□□□ 0.62
NEK3P51956 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.94■□□□□ 0.62
NEK3P51956 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.94■□□□□ 0.62
NEK3P51956 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.94■□□□□ 0.62
NEK3P51956 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.94■□□□□ 0.62
NEK3P51956 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.94■□□□□ 0.62
NEK3P51956 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
NEK3P51956 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.94■□□□□ 0.62
NEK3P51956 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
NEK3P51956 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
NEK3P51956 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.94■□□□□ 0.62
NEK3P51956 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NEK3P51956 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NEK3P51956 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
NEK3P51956 AC020916.1-201ENST00000587762 1774 ntBASIC18.93■□□□□ 0.62
NEK3P51956 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
NEK3P51956 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NEK3P51956 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.93■□□□□ 0.62
NEK3P51956 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.93■□□□□ 0.62
NEK3P51956 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.93■□□□□ 0.62
NEK3P51956 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NEK3P51956 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
NEK3P51956 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.93■□□□□ 0.62
NEK3P51956 MCCD1P1-208ENST00000445732 328 ntBASIC18.93■□□□□ 0.62
NEK3P51956 HOMER2P1-201ENST00000455653 964 ntBASIC18.93■□□□□ 0.62
NEK3P51956 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.93■□□□□ 0.62
NEK3P51956 AL441883.1-201ENST00000566170 1045 ntBASIC18.93■□□□□ 0.62
NEK3P51956 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
NEK3P51956 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
NEK3P51956 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
NEK3P51956 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.93■□□□□ 0.62
NEK3P51956 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
NEK3P51956 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
NEK3P51956 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NEK3P51956 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
NEK3P51956 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NEK3P51956 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
NEK3P51956 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
NEK3P51956 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.93■□□□□ 0.62
NEK3P51956 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
NEK3P51956 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.93■□□□□ 0.62
NEK3P51956 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
NEK3P51956 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.92■□□□□ 0.62
NEK3P51956 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
NEK3P51956 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
NEK3P51956 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms