Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC21.24■□□□□ 0.99
CTCFP49711 RPS29-206ENST00000557111 488 ntTSL 2 BASIC21.24■□□□□ 0.99
CTCFP49711 AC005225.4-201ENST00000557330 545 ntBASIC21.24■□□□□ 0.99
CTCFP49711 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CTCFP49711 SERF2-217ENST00000630046 862 ntTSL 5 BASIC21.24■□□□□ 0.99
CTCFP49711 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.24■□□□□ 0.99
CTCFP49711 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTCFP49711 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTCFP49711 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTCFP49711 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC21.24■□□□□ 0.99
CTCFP49711 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC21.24■□□□□ 0.99
CTCFP49711 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTCFP49711 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CTCFP49711 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTCFP49711 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CTCFP49711 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CTCFP49711 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTCFP49711 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTCFP49711 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CTCFP49711 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC21.23■□□□□ 0.99
CTCFP49711 AC245100.3-201ENST00000441281 285 ntBASIC21.23■□□□□ 0.99
CTCFP49711 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC21.23■□□□□ 0.99
CTCFP49711 AC022494.1-201ENST00000466044 728 ntBASIC21.23■□□□□ 0.99
CTCFP49711 AC069262.1-201ENST00000539058 672 ntBASIC21.23■□□□□ 0.99
CTCFP49711 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.23■□□□□ 0.99
CTCFP49711 AC027612.4-201ENST00000605371 583 ntBASIC21.23■□□□□ 0.99
CTCFP49711 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CTCFP49711 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CTCFP49711 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTCFP49711 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC21.23■□□□□ 0.99
CTCFP49711 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
CTCFP49711 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
CTCFP49711 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.22■□□□□ 0.99
CTCFP49711 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTCFP49711 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTCFP49711 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTCFP49711 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTCFP49711 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTCFP49711 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTCFP49711 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTCFP49711 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
CTCFP49711 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC21.22■□□□□ 0.99
CTCFP49711 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC21.22■□□□□ 0.99
CTCFP49711 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CTCFP49711 MIR3180-4-201ENST00000582223 153 ntBASIC21.22■□□□□ 0.99
CTCFP49711 Z92544.3-201ENST00000624747 417 ntBASIC21.22■□□□□ 0.99
CTCFP49711 AC107918.4-202ENST00000641623 219 ntBASIC21.22■□□□□ 0.99
CTCFP49711 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.22■□□□□ 0.99
CTCFP49711 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CTCFP49711 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
CTCFP49711 AC092720.2-201ENST00000602388 1665 ntBASIC21.21■□□□□ 0.99
CTCFP49711 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTCFP49711 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
CTCFP49711 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CTCFP49711 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC21.21■□□□□ 0.99
CTCFP49711 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.21■□□□□ 0.99
CTCFP49711 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.21■□□□□ 0.99
CTCFP49711 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.21■□□□□ 0.99
CTCFP49711 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTCFP49711 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTCFP49711 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.21■□□□□ 0.99
CTCFP49711 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTCFP49711 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CTCFP49711 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTCFP49711 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
CTCFP49711 MKNK2P1-201ENST00000437526 628 ntBASIC21.21■□□□□ 0.99
CTCFP49711 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC21.21■□□□□ 0.99
CTCFP49711 RBSN-204ENST00000449050 903 ntTSL 2 BASIC21.21■□□□□ 0.99
CTCFP49711 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC21.21■□□□□ 0.99
CTCFP49711 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC21.21■□□□□ 0.99
CTCFP49711 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CTCFP49711 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTCFP49711 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CTCFP49711 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CTCFP49711 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CTCFP49711 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTCFP49711 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.2■□□□□ 0.98
CTCFP49711 ELL2P1-201ENST00000413990 1906 ntBASIC21.2■□□□□ 0.98
CTCFP49711 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.2■□□□□ 0.98
CTCFP49711 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
CTCFP49711 CD82-202ENST00000342935 967 ntTSL 5 BASIC21.2■□□□□ 0.98
CTCFP49711 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CTCFP49711 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC21.2■□□□□ 0.98
CTCFP49711 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTCFP49711 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.2■□□□□ 0.98
CTCFP49711 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.2■□□□□ 0.98
CTCFP49711 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTCFP49711 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC21.2■□□□□ 0.98
CTCFP49711 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC21.2■□□□□ 0.98
CTCFP49711 AQP6-205ENST00000618286 829 ntTSL 5 BASIC21.2■□□□□ 0.98
CTCFP49711 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
CTCFP49711 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.2■□□□□ 0.98
CTCFP49711 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CTCFP49711 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CTCFP49711 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTCFP49711 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CTCFP49711 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTCFP49711 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTCFP49711 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTCFP49711 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms