Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 RCC2P3-201ENST00000418112 1537 ntBASIC16.22■□□□□ 0.19
SOX2P48431 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SOX2P48431 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX2P48431 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SOX2P48431 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.22■□□□□ 0.19
SOX2P48431 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SOX2P48431 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.21■□□□□ 0.19
SOX2P48431 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SOX2P48431 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX2P48431 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.21■□□□□ 0.19
SOX2P48431 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX2P48431 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SOX2P48431 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX2P48431 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
SOX2P48431 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX2P48431 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.21■□□□□ 0.19
SOX2P48431 GAS7-202ENST00000396115 929 ntTSL 5 BASIC16.21■□□□□ 0.19
SOX2P48431 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.21■□□□□ 0.19
SOX2P48431 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.21■□□□□ 0.19
SOX2P48431 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SOX2P48431 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.21■□□□□ 0.19
SOX2P48431 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.21■□□□□ 0.19
SOX2P48431 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SOX2P48431 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.21■□□□□ 0.19
SOX2P48431 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX2P48431 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.21■□□□□ 0.19
SOX2P48431 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SOX2P48431 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SOX2P48431 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.21■□□□□ 0.19
SOX2P48431 AC008556.1-201ENST00000610908 2040 ntBASIC16.21■□□□□ 0.18
SOX2P48431 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SOX2P48431 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
SOX2P48431 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SOX2P48431 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SOX2P48431 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.21■□□□□ 0.18
SOX2P48431 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SOX2P48431 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX2P48431 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX2P48431 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SOX2P48431 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SOX2P48431 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.2■□□□□ 0.18
SOX2P48431 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
SOX2P48431 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX2P48431 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX2P48431 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.2■□□□□ 0.18
SOX2P48431 KRT16P5-201ENST00000455284 522 ntBASIC16.2■□□□□ 0.18
SOX2P48431 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
SOX2P48431 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SOX2P48431 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC16.2■□□□□ 0.18
SOX2P48431 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.2■□□□□ 0.18
SOX2P48431 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SOX2P48431 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SOX2P48431 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SOX2P48431 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX2P48431 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX2P48431 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC16.2■□□□□ 0.18
SOX2P48431 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX2P48431 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.2■□□□□ 0.18
SOX2P48431 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.2■□□□□ 0.18
SOX2P48431 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.2■□□□□ 0.18
SOX2P48431 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX2P48431 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SOX2P48431 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SOX2P48431 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SOX2P48431 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SOX2P48431 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC16.19■□□□□ 0.18
SOX2P48431 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SOX2P48431 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SOX2P48431 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.19■□□□□ 0.18
SOX2P48431 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.19■□□□□ 0.18
SOX2P48431 MYLKP1-201ENST00000509077 1580 ntBASIC16.19■□□□□ 0.18
SOX2P48431 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
SOX2P48431 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
SOX2P48431 RNA5SP413-201ENST00000516373 109 ntBASIC16.19■□□□□ 0.18
SOX2P48431 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC16.19■□□□□ 0.18
SOX2P48431 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC16.19■□□□□ 0.18
SOX2P48431 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SOX2P48431 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC16.19■□□□□ 0.18
SOX2P48431 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC16.19■□□□□ 0.18
SOX2P48431 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 AL445675.2-201ENST00000620291 557 ntBASIC16.19■□□□□ 0.18
SOX2P48431 CROCCP1-201ENST00000426910 5675 ntBASIC16.19■□□□□ 0.18
SOX2P48431 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SOX2P48431 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.19■□□□□ 0.18
SOX2P48431 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SOX2P48431 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms