Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC120498.9-201ENST00000339021 3867 ntBASIC17.96■□□□□ 0.46
SDC3O75056 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.95■□□□□ 0.46
SDC3O75056 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.95■□□□□ 0.46
SDC3O75056 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 AL163051.1-201ENST00000569214 1512 ntBASIC17.95■□□□□ 0.46
SDC3O75056 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 MRPL3P1-201ENST00000400109 1033 ntBASIC17.95■□□□□ 0.46
SDC3O75056 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.95■□□□□ 0.46
SDC3O75056 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.95■□□□□ 0.46
SDC3O75056 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.95■□□□□ 0.46
SDC3O75056 AC011840.4-201ENST00000578471 627 ntBASIC17.95■□□□□ 0.46
SDC3O75056 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.95■□□□□ 0.46
SDC3O75056 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.95■□□□□ 0.46
SDC3O75056 AL161938.1-201ENST00000569833 2180 ntBASIC17.95■□□□□ 0.46
SDC3O75056 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.95■□□□□ 0.46
SDC3O75056 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SDC3O75056 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
SDC3O75056 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.95■□□□□ 0.46
SDC3O75056 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SDC3O75056 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
SDC3O75056 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SDC3O75056 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
SDC3O75056 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.94■□□□□ 0.46
SDC3O75056 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
SDC3O75056 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.94■□□□□ 0.46
SDC3O75056 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.94■□□□□ 0.46
SDC3O75056 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SDC3O75056 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SDC3O75056 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SDC3O75056 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SDC3O75056 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SDC3O75056 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
SDC3O75056 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
SDC3O75056 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.94■□□□□ 0.46
SDC3O75056 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.94■□□□□ 0.46
SDC3O75056 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.94■□□□□ 0.46
SDC3O75056 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
SDC3O75056 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
SDC3O75056 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SDC3O75056 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
SDC3O75056 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SDC3O75056 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
SDC3O75056 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
SDC3O75056 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SDC3O75056 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.93■□□□□ 0.46
SDC3O75056 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
SDC3O75056 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SDC3O75056 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SDC3O75056 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.93■□□□□ 0.46
SDC3O75056 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.93■□□□□ 0.46
SDC3O75056 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.93■□□□□ 0.46
SDC3O75056 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.93■□□□□ 0.46
SDC3O75056 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SDC3O75056 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.93■□□□□ 0.46
SDC3O75056 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
SDC3O75056 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.93■□□□□ 0.46
SDC3O75056 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.93■□□□□ 0.46
SDC3O75056 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
SDC3O75056 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SDC3O75056 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
SDC3O75056 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.92■□□□□ 0.46
SDC3O75056 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
SDC3O75056 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SDC3O75056 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.92■□□□□ 0.46
SDC3O75056 AL020996.1-203ENST00000536896 2307 ntBASIC17.92■□□□□ 0.46
SDC3O75056 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms