Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHOX2O60902 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHOX2O60902 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHOX2O60902 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SHOX2O60902 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.42■□□□□ 0.54
SHOX2O60902 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHOX2O60902 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.41■□□□□ 0.54
SHOX2O60902 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.41■□□□□ 0.54
SHOX2O60902 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.41■□□□□ 0.54
SHOX2O60902 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.41■□□□□ 0.54
SHOX2O60902 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SHOX2O60902 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
SHOX2O60902 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 AL355472.2-201ENST00000422958 438 ntBASIC18.41■□□□□ 0.54
SHOX2O60902 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.41■□□□□ 0.54
SHOX2O60902 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.41■□□□□ 0.54
SHOX2O60902 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.41■□□□□ 0.54
SHOX2O60902 AL589743.5-201ENST00000616611 1050 ntBASIC18.41■□□□□ 0.54
SHOX2O60902 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC18.41■□□□□ 0.54
SHOX2O60902 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.41■□□□□ 0.54
SHOX2O60902 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SHOX2O60902 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.41■□□□□ 0.54
SHOX2O60902 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.41■□□□□ 0.54
SHOX2O60902 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.41■□□□□ 0.54
SHOX2O60902 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHOX2O60902 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC18.4■□□□□ 0.54
SHOX2O60902 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 AGK-211ENST00000629555 2765 ntTSL 5 BASIC18.4■□□□□ 0.54
SHOX2O60902 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.4■□□□□ 0.54
SHOX2O60902 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.4■□□□□ 0.54
SHOX2O60902 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.4■□□□□ 0.54
SHOX2O60902 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.4■□□□□ 0.54
SHOX2O60902 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
SHOX2O60902 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC18.4■□□□□ 0.54
SHOX2O60902 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.4■□□□□ 0.54
SHOX2O60902 AC133963.1-201ENST00000504166 1679 ntBASIC18.4■□□□□ 0.54
SHOX2O60902 AC138932.1-201ENST00000534164 6830 ntBASIC18.4■□□□□ 0.54
SHOX2O60902 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHOX2O60902 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.4■□□□□ 0.54
SHOX2O60902 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
SHOX2O60902 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.39■□□□□ 0.54
SHOX2O60902 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SHOX2O60902 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.39■□□□□ 0.54
SHOX2O60902 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
SHOX2O60902 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.39■□□□□ 0.53
SHOX2O60902 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SHOX2O60902 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.39■□□□□ 0.53
SHOX2O60902 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.39■□□□□ 0.53
SHOX2O60902 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.39■□□□□ 0.53
SHOX2O60902 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
SHOX2O60902 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHOX2O60902 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SHOX2O60902 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.38■□□□□ 0.53
SHOX2O60902 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms