Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.18■□□□□ 0.18
LMX1BO60663 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
LMX1BO60663 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.18■□□□□ 0.18
LMX1BO60663 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.18■□□□□ 0.18
LMX1BO60663 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
LMX1BO60663 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1BO60663 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1BO60663 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.17■□□□□ 0.18
LMX1BO60663 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1BO60663 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC16.17■□□□□ 0.18
LMX1BO60663 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1BO60663 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1BO60663 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1BO60663 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
LMX1BO60663 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1BO60663 MESTP1-201ENST00000404287 994 ntBASIC16.17■□□□□ 0.18
LMX1BO60663 AK4P3-201ENST00000418260 669 ntBASIC16.17■□□□□ 0.18
LMX1BO60663 BX664615.1-201ENST00000443558 458 ntBASIC16.17■□□□□ 0.18
LMX1BO60663 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC16.17■□□□□ 0.18
LMX1BO60663 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.17■□□□□ 0.18
LMX1BO60663 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
LMX1BO60663 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC16.17■□□□□ 0.18
LMX1BO60663 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.17■□□□□ 0.18
LMX1BO60663 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1BO60663 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.17■□□□□ 0.18
LMX1BO60663 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.17■□□□□ 0.18
LMX1BO60663 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
LMX1BO60663 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1BO60663 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.17■□□□□ 0.18
LMX1BO60663 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1BO60663 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
LMX1BO60663 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.17■□□□□ 0.18
LMX1BO60663 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1BO60663 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1BO60663 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.17■□□□□ 0.18
LMX1BO60663 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1BO60663 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1BO60663 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1BO60663 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.17■□□□□ 0.18
LMX1BO60663 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1BO60663 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.16■□□□□ 0.18
LMX1BO60663 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
LMX1BO60663 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
LMX1BO60663 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1BO60663 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1BO60663 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1BO60663 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.16■□□□□ 0.18
LMX1BO60663 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1BO60663 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC16.16■□□□□ 0.18
LMX1BO60663 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.16■□□□□ 0.18
LMX1BO60663 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.16■□□□□ 0.18
LMX1BO60663 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.16■□□□□ 0.18
LMX1BO60663 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1BO60663 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.16■□□□□ 0.18
LMX1BO60663 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
LMX1BO60663 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
LMX1BO60663 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
LMX1BO60663 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
LMX1BO60663 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.16■□□□□ 0.18
LMX1BO60663 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.16■□□□□ 0.18
LMX1BO60663 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC16.16■□□□□ 0.18
LMX1BO60663 CKBP1-201ENST00000565489 1086 ntBASIC16.16■□□□□ 0.18
LMX1BO60663 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.16■□□□□ 0.18
LMX1BO60663 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
LMX1BO60663 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
LMX1BO60663 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.16■□□□□ 0.18
LMX1BO60663 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.16■□□□□ 0.18
LMX1BO60663 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
LMX1BO60663 AL162741.1-201ENST00000565563 1558 ntBASIC16.16■□□□□ 0.18
LMX1BO60663 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1BO60663 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
LMX1BO60663 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1BO60663 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
LMX1BO60663 FZD10-202ENST00000539839 3282 ntBASIC16.16■□□□□ 0.18
LMX1BO60663 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1BO60663 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
LMX1BO60663 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.16■□□□□ 0.18
LMX1BO60663 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.16■□□□□ 0.18
LMX1BO60663 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1BO60663 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC16.16■□□□□ 0.18
LMX1BO60663 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
LMX1BO60663 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
LMX1BO60663 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LMX1BO60663 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
LMX1BO60663 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms