Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SGCEO43556 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SGCEO43556 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
SGCEO43556 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SGCEO43556 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SGCEO43556 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.27■□□□□ 0.19
SGCEO43556 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SGCEO43556 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SGCEO43556 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.27■□□□□ 0.19
SGCEO43556 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.27■□□□□ 0.19
SGCEO43556 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
SGCEO43556 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.26■□□□□ 0.19
SGCEO43556 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.26■□□□□ 0.19
SGCEO43556 AC036111.1-201ENST00000533973 1582 ntBASIC16.26■□□□□ 0.19
SGCEO43556 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.26■□□□□ 0.19
SGCEO43556 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 AC012313.1-201ENST00000593393 3059 ntBASIC16.26■□□□□ 0.19
SGCEO43556 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.26■□□□□ 0.19
SGCEO43556 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.26■□□□□ 0.19
SGCEO43556 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.26■□□□□ 0.19
SGCEO43556 AC007663.1-201ENST00000438948 1240 ntBASIC16.26■□□□□ 0.19
SGCEO43556 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 AC128688.1-201ENST00000487626 519 ntBASIC16.26■□□□□ 0.19
SGCEO43556 KRT18P41-201ENST00000518924 1277 ntBASIC16.26■□□□□ 0.19
SGCEO43556 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.26■□□□□ 0.19
SGCEO43556 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
SGCEO43556 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
SGCEO43556 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SGCEO43556 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.26■□□□□ 0.19
SGCEO43556 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SGCEO43556 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.26■□□□□ 0.19
SGCEO43556 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SGCEO43556 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SGCEO43556 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.25■□□□□ 0.19
SGCEO43556 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.25■□□□□ 0.19
SGCEO43556 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
SGCEO43556 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SGCEO43556 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
SGCEO43556 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 AP000593.1-201ENST00000393668 712 ntBASIC16.25■□□□□ 0.19
SGCEO43556 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.25■□□□□ 0.19
SGCEO43556 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.25■□□□□ 0.19
SGCEO43556 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.25■□□□□ 0.19
SGCEO43556 AC010653.2-201ENST00000623505 997 ntBASIC16.25■□□□□ 0.19
SGCEO43556 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
SGCEO43556 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 KRT8P9-201ENST00000558927 1449 ntBASIC16.25■□□□□ 0.19
SGCEO43556 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
SGCEO43556 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SGCEO43556 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SGCEO43556 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SGCEO43556 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.24■□□□□ 0.19
SGCEO43556 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.24■□□□□ 0.19
SGCEO43556 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
SGCEO43556 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SGCEO43556 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SGCEO43556 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.24■□□□□ 0.19
SGCEO43556 CYP2D8P-201ENST00000433633 1490 ntBASIC16.24■□□□□ 0.19
SGCEO43556 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.24■□□□□ 0.19
SGCEO43556 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
SGCEO43556 AP000997.3-201ENST00000623333 2250 ntBASIC16.24■□□□□ 0.19
SGCEO43556 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SGCEO43556 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
SGCEO43556 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SGCEO43556 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SGCEO43556 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SGCEO43556 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SGCEO43556 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.24■□□□□ 0.19
SGCEO43556 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.24■□□□□ 0.19
SGCEO43556 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SGCEO43556 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.24■□□□□ 0.19
SGCEO43556 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.24■□□□□ 0.19
SGCEO43556 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.24■□□□□ 0.19
SGCEO43556 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms