Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AC026740.1-201ENST00000607068 791 ntBASIC17.21■□□□□ 0.35
CACNA1AO00555 AC010507.1-201ENST00000633895 436 ntBASIC17.21■□□□□ 0.35
CACNA1AO00555 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
CACNA1AO00555 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.21■□□□□ 0.35
CACNA1AO00555 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC17.21■□□□□ 0.35
CACNA1AO00555 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.21■□□□□ 0.35
CACNA1AO00555 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CACNA1AO00555 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CACNA1AO00555 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.21■□□□□ 0.35
CACNA1AO00555 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CACNA1AO00555 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CACNA1AO00555 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CACNA1AO00555 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CACNA1AO00555 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CACNA1AO00555 AC007225.1-201ENST00000566331 1836 ntBASIC17.2■□□□□ 0.34
CACNA1AO00555 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.2■□□□□ 0.34
CACNA1AO00555 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CACNA1AO00555 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.2■□□□□ 0.34
CACNA1AO00555 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.2■□□□□ 0.34
CACNA1AO00555 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.2■□□□□ 0.34
CACNA1AO00555 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
CACNA1AO00555 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC17.2■□□□□ 0.34
CACNA1AO00555 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CACNA1AO00555 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CACNA1AO00555 LINC01126-201ENST00000623515 1646 ntBASIC17.2■□□□□ 0.34
CACNA1AO00555 AP005212.1-201ENST00000581547 1997 ntBASIC17.2■□□□□ 0.34
CACNA1AO00555 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CACNA1AO00555 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.2■□□□□ 0.34
CACNA1AO00555 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CACNA1AO00555 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CACNA1AO00555 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CACNA1AO00555 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CACNA1AO00555 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CACNA1AO00555 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.2■□□□□ 0.34
CACNA1AO00555 HAUS4P1-201ENST00000406739 1145 ntBASIC17.2■□□□□ 0.34
CACNA1AO00555 AL512356.2-201ENST00000546955 174 ntBASIC17.2■□□□□ 0.34
CACNA1AO00555 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CACNA1AO00555 AL022326.1-202ENST00000641533 845 ntBASIC17.2■□□□□ 0.34
CACNA1AO00555 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CACNA1AO00555 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CACNA1AO00555 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CACNA1AO00555 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CACNA1AO00555 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
CACNA1AO00555 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CACNA1AO00555 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC17.2■□□□□ 0.34
CACNA1AO00555 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CACNA1AO00555 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CACNA1AO00555 AC079776.2-201ENST00000641154 1609 ntBASIC17.19■□□□□ 0.34
CACNA1AO00555 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 SDHAP1-207ENST00000440850 2000 ntBASIC17.19■□□□□ 0.34
CACNA1AO00555 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.19■□□□□ 0.34
CACNA1AO00555 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.19■□□□□ 0.34
CACNA1AO00555 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.19■□□□□ 0.34
CACNA1AO00555 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
CACNA1AO00555 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 AC006504.4-201ENST00000592118 1568 ntBASIC17.19■□□□□ 0.34
CACNA1AO00555 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.19■□□□□ 0.34
CACNA1AO00555 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.19■□□□□ 0.34
CACNA1AO00555 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 PRYP5-201ENST00000451909 266 ntBASIC17.19■□□□□ 0.34
CACNA1AO00555 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CACNA1AO00555 AC004817.3-201ENST00000602957 2129 ntBASIC17.18■□□□□ 0.34
CACNA1AO00555 AC092506.1-202ENST00000401022 528 ntBASIC17.18■□□□□ 0.34
CACNA1AO00555 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.18■□□□□ 0.34
CACNA1AO00555 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.18■□□□□ 0.34
CACNA1AO00555 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CACNA1AO00555 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.18■□□□□ 0.34
CACNA1AO00555 FAM8A2P-201ENST00000528813 1142 ntBASIC17.18■□□□□ 0.34
CACNA1AO00555 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.18■□□□□ 0.34
CACNA1AO00555 MIR6805-201ENST00000615055 62 ntBASIC17.18■□□□□ 0.34
CACNA1AO00555 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CACNA1AO00555 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CACNA1AO00555 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CACNA1AO00555 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CACNA1AO00555 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CACNA1AO00555 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CACNA1AO00555 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CACNA1AO00555 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC17.18■□□□□ 0.34
CACNA1AO00555 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CACNA1AO00555 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.18■□□□□ 0.34
CACNA1AO00555 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
CACNA1AO00555 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.18■□□□□ 0.34
CACNA1AO00555 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.18■□□□□ 0.34
CACNA1AO00555 BX005266.1-201ENST00000473402 457 ntBASIC17.18■□□□□ 0.34
CACNA1AO00555 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.18■□□□□ 0.34
CACNA1AO00555 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.18■□□□□ 0.34
CACNA1AO00555 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.18■□□□□ 0.34
CACNA1AO00555 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CACNA1AO00555 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms