Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CBX4O00257 AC009102.3-201ENST00000623118 1491 ntBASIC18.77■□□□□ 0.6
CBX4O00257 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CBX4O00257 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CBX4O00257 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CBX4O00257 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CBX4O00257 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CBX4O00257 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.77■□□□□ 0.6
CBX4O00257 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CBX4O00257 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CBX4O00257 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CBX4O00257 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.77■□□□□ 0.6
CBX4O00257 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CBX4O00257 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CBX4O00257 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CBX4O00257 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.77■□□□□ 0.6
CBX4O00257 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CBX4O00257 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
CBX4O00257 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CBX4O00257 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.77■□□□□ 0.6
CBX4O00257 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.77■□□□□ 0.6
CBX4O00257 HLA-F-220ENST00000434407 884 ntBASIC18.77■□□□□ 0.6
CBX4O00257 KRT18P48-201ENST00000434763 852 ntBASIC18.77■□□□□ 0.6
CBX4O00257 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.77■□□□□ 0.6
CBX4O00257 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CBX4O00257 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.77■□□□□ 0.6
CBX4O00257 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.77■□□□□ 0.6
CBX4O00257 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.77■□□□□ 0.6
CBX4O00257 AL136038.3-201ENST00000561909 1096 ntBASIC18.77■□□□□ 0.6
CBX4O00257 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.77■□□□□ 0.6
CBX4O00257 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CBX4O00257 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CBX4O00257 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CBX4O00257 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CBX4O00257 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CBX4O00257 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CBX4O00257 AC005332.1-201ENST00000577698 1310 ntBASIC18.76■□□□□ 0.59
CBX4O00257 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CBX4O00257 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CBX4O00257 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CBX4O00257 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CBX4O00257 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CBX4O00257 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
CBX4O00257 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CBX4O00257 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.76■□□□□ 0.59
CBX4O00257 DUSP5P1-201ENST00000441325 1139 ntBASIC18.76■□□□□ 0.59
CBX4O00257 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.76■□□□□ 0.59
CBX4O00257 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.76■□□□□ 0.59
CBX4O00257 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.76■□□□□ 0.59
CBX4O00257 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CBX4O00257 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.76■□□□□ 0.59
CBX4O00257 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CBX4O00257 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.76■□□□□ 0.59
CBX4O00257 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
CBX4O00257 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CBX4O00257 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.76■□□□□ 0.59
CBX4O00257 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CBX4O00257 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CBX4O00257 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CBX4O00257 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CBX4O00257 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.76■□□□□ 0.59
CBX4O00257 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CBX4O00257 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CBX4O00257 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CBX4O00257 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CBX4O00257 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.75■□□□□ 0.59
CBX4O00257 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CBX4O00257 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.75■□□□□ 0.59
CBX4O00257 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
CBX4O00257 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
CBX4O00257 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CBX4O00257 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.75■□□□□ 0.59
CBX4O00257 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CBX4O00257 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.75■□□□□ 0.59
CBX4O00257 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
CBX4O00257 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.75■□□□□ 0.59
CBX4O00257 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.75■□□□□ 0.59
CBX4O00257 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CBX4O00257 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.75■□□□□ 0.59
CBX4O00257 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC18.75■□□□□ 0.59
CBX4O00257 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.75■□□□□ 0.59
CBX4O00257 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CBX4O00257 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.75■□□□□ 0.59
CBX4O00257 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
CBX4O00257 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CBX4O00257 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CBX4O00257 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.75■□□□□ 0.59
CBX4O00257 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CBX4O00257 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CBX4O00257 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.74■□□□□ 0.59
CBX4O00257 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.74■□□□□ 0.59
CBX4O00257 SDHAP2-201ENST00000455183 2001 ntBASIC18.74■□□□□ 0.59
CBX4O00257 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CBX4O00257 BCL2-203ENST00000589955 5011 ntBASIC18.74■□□□□ 0.59
CBX4O00257 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CBX4O00257 WIZP1-201ENST00000531444 2299 ntBASIC18.74■□□□□ 0.59
CBX4O00257 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CBX4O00257 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms