Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
CLCF1Q9UBD9 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCF1Q9UBD9 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCF1Q9UBD9 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
CLCF1Q9UBD9 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CLCF1Q9UBD9 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
CLCF1Q9UBD9 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 DRAXINP1-201ENST00000437611 948 ntBASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 KRT126P-201ENST00000549467 1181 ntBASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 KRT18P1-202ENST00000452408 1331 ntBASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 AL499627.1-201ENST00000569373 2188 ntBASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLCF1Q9UBD9 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLCF1Q9UBD9 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLCF1Q9UBD9 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLCF1Q9UBD9 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLCF1Q9UBD9 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLCF1Q9UBD9 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLCF1Q9UBD9 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLCF1Q9UBD9 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms