Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 AC009053.2-201ENST00000563701 2365 ntBASIC18.18■□□□□ 0.5
MKS1Q9NXB0 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 B3GAT3P1-201ENST00000471720 806 ntBASIC18.18■□□□□ 0.5
MKS1Q9NXB0 AC011506.1-201ENST00000474329 610 ntBASIC18.18■□□□□ 0.5
MKS1Q9NXB0 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 RN7SL471P-201ENST00000580476 299 ntBASIC18.18■□□□□ 0.5
MKS1Q9NXB0 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 PP12613-201ENST00000424958 2230 ntBASIC18.18■□□□□ 0.5
MKS1Q9NXB0 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 AL163051.1-201ENST00000569214 1512 ntBASIC18.18■□□□□ 0.5
MKS1Q9NXB0 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.18■□□□□ 0.5
MKS1Q9NXB0 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 RNA5SP413-201ENST00000516373 109 ntBASIC18.17■□□□□ 0.5
MKS1Q9NXB0 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 AP000692.2-201ENST00000608391 879 ntBASIC18.17■□□□□ 0.5
MKS1Q9NXB0 MIR6786-201ENST00000616843 113 ntBASIC18.17■□□□□ 0.5
MKS1Q9NXB0 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MKS1Q9NXB0 AC096733.2-201ENST00000609937 1394 ntBASIC18.17■□□□□ 0.5
MKS1Q9NXB0 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 MIR935-201ENST00000401179 91 ntBASIC18.16■□□□□ 0.5
MKS1Q9NXB0 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MKS1Q9NXB0 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms