Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 ADK-206ENST00000541550 2222 ntTSL 2 BASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 MED15P5-201ENST00000423150 992 ntBASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 AC068472.1-201ENST00000474589 881 ntBASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 Z83851.2-201ENST00000609564 659 ntBASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SHANK3Q9BYB0 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 AC009154.2-201ENST00000621177 724 ntBASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC23.77■■□□□ 1.4
SHANK3Q9BYB0 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 AC093909.1-201ENST00000504731 1122 ntBASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 OR7E14P-202ENST00000530490 1290 ntBASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 AC009533.2-201ENST00000543664 586 ntBASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 AC027796.2-201ENST00000575326 344 ntBASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
SHANK3Q9BYB0 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SHANK3Q9BYB0 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
SHANK3Q9BYB0 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SHANK3Q9BYB0 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SHANK3Q9BYB0 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SHANK3Q9BYB0 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SHANK3Q9BYB0 CLDN5-201ENST00000403084 2357 ntBASIC23.75■■□□□ 1.39
SHANK3Q9BYB0 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC23.75■■□□□ 1.39
SHANK3Q9BYB0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC23.75■■□□□ 1.39
SHANK3Q9BYB0 DANCR-204ENST00000444958 709 ntTSL 3 BASIC23.75■■□□□ 1.39
SHANK3Q9BYB0 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SHANK3Q9BYB0 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SHANK3Q9BYB0 AC104109.2-201ENST00000602919 1418 ntBASIC23.75■■□□□ 1.39
SHANK3Q9BYB0 FAM197Y3-203ENST00000618346 717 ntBASIC23.75■■□□□ 1.39
SHANK3Q9BYB0 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 RAB17-203ENST00000409576 466 ntTSL 3 BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 LINC01126-201ENST00000623515 1646 ntBASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 AL499627.1-201ENST00000569373 2188 ntBASIC23.74■■□□□ 1.39
SHANK3Q9BYB0 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 YBX2P1-201ENST00000394192 760 ntBASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 MTCL1P1-201ENST00000446207 792 ntBASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 AC092910.1-201ENST00000482027 1129 ntBASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SHANK3Q9BYB0 RPSAP43-201ENST00000402237 625 ntBASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms