Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP28Q96RU2 AC134043.2-201ENST00000624206 2238 ntBASIC21.07■□□□□ 0.96
USP28Q96RU2 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP28Q96RU2 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC21.07■□□□□ 0.96
USP28Q96RU2 AL390955.1-201ENST00000428694 934 ntBASIC21.07■□□□□ 0.96
USP28Q96RU2 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.07■□□□□ 0.96
USP28Q96RU2 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC21.07■□□□□ 0.96
USP28Q96RU2 CR769767.2-201ENST00000622735 460 ntBASIC21.07■□□□□ 0.96
USP28Q96RU2 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP28Q96RU2 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.07■□□□□ 0.96
USP28Q96RU2 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21.07■□□□□ 0.96
USP28Q96RU2 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP28Q96RU2 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP28Q96RU2 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP28Q96RU2 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP28Q96RU2 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.07■□□□□ 0.96
USP28Q96RU2 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP28Q96RU2 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP28Q96RU2 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.07■□□□□ 0.96
USP28Q96RU2 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP28Q96RU2 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP28Q96RU2 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.07■□□□□ 0.96
USP28Q96RU2 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP28Q96RU2 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
USP28Q96RU2 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.06■□□□□ 0.96
USP28Q96RU2 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP28Q96RU2 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
USP28Q96RU2 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP28Q96RU2 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC21.06■□□□□ 0.96
USP28Q96RU2 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP28Q96RU2 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP28Q96RU2 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP28Q96RU2 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
USP28Q96RU2 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
USP28Q96RU2 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.06■□□□□ 0.96
USP28Q96RU2 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC21.06■□□□□ 0.96
USP28Q96RU2 AL353719.1-201ENST00000566847 864 ntBASIC21.06■□□□□ 0.96
USP28Q96RU2 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.06■□□□□ 0.96
USP28Q96RU2 AP000525.1-201ENST00000608286 694 ntBASIC21.06■□□□□ 0.96
USP28Q96RU2 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.06■□□□□ 0.96
USP28Q96RU2 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP28Q96RU2 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP28Q96RU2 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.06■□□□□ 0.96
USP28Q96RU2 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP28Q96RU2 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP28Q96RU2 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP28Q96RU2 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.06■□□□□ 0.96
USP28Q96RU2 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP28Q96RU2 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC21.06■□□□□ 0.96
USP28Q96RU2 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC21.06■□□□□ 0.96
USP28Q96RU2 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.05■□□□□ 0.96
USP28Q96RU2 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
USP28Q96RU2 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
USP28Q96RU2 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
USP28Q96RU2 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.05■□□□□ 0.96
USP28Q96RU2 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
USP28Q96RU2 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
USP28Q96RU2 UNC93B2-201ENST00000285383 730 ntBASIC21.05■□□□□ 0.96
USP28Q96RU2 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
USP28Q96RU2 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.05■□□□□ 0.96
USP28Q96RU2 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.05■□□□□ 0.96
USP28Q96RU2 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.05■□□□□ 0.96
USP28Q96RU2 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.05■□□□□ 0.96
USP28Q96RU2 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC21.05■□□□□ 0.96
USP28Q96RU2 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP28Q96RU2 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC21.05■□□□□ 0.96
USP28Q96RU2 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 AC092338.2-201ENST00000568827 1415 ntBASIC21.04■□□□□ 0.96
USP28Q96RU2 HOXB1-202ENST00000577092 1414 ntBASIC21.04■□□□□ 0.96
USP28Q96RU2 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.04■□□□□ 0.96
USP28Q96RU2 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.04■□□□□ 0.96
USP28Q96RU2 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.04■□□□□ 0.96
USP28Q96RU2 SLC25A1P2-201ENST00000430693 912 ntBASIC21.04■□□□□ 0.96
USP28Q96RU2 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.04■□□□□ 0.96
USP28Q96RU2 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.04■□□□□ 0.96
USP28Q96RU2 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.04■□□□□ 0.96
USP28Q96RU2 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
USP28Q96RU2 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
USP28Q96RU2 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.04■□□□□ 0.96
USP28Q96RU2 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms