Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 AL137013.1-201ENST00000432946 1228 ntBASIC14.25□□□□□ -0.13
CCDC140Q96MF4 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 P4HB-223ENST00000576390 439 ntTSL 4 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 AL023973.1-201ENST00000624619 620 ntBASIC14.25□□□□□ -0.13
CCDC140Q96MF4 AL390961.4-201ENST00000623958 2535 ntBASIC14.25□□□□□ -0.13
CCDC140Q96MF4 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC140Q96MF4 AC093677.2-201ENST00000600169 1863 ntBASIC14.25□□□□□ -0.13
CCDC140Q96MF4 LGALS8-AS1-201ENST00000487567 1457 ntBASIC14.25□□□□□ -0.13
CCDC140Q96MF4 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 ABALON-201ENST00000629058 1903 ntBASIC14.24□□□□□ -0.13
CCDC140Q96MF4 AC005521.1-201ENST00000393351 872 ntBASIC14.24□□□□□ -0.13
CCDC140Q96MF4 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 AC092865.7-201ENST00000641832 219 ntBASIC14.24□□□□□ -0.13
CCDC140Q96MF4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 GMCL1P1-201ENST00000463439 1581 ntBASIC14.24□□□□□ -0.13
CCDC140Q96MF4 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 AC073508.3-201ENST00000619697 1419 ntBASIC14.24□□□□□ -0.13
CCDC140Q96MF4 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
CCDC140Q96MF4 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 MCC-208ENST00000514701 2855 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 ANKRD20A18P-201ENST00000359341 492 ntBASIC14.23□□□□□ -0.13
CCDC140Q96MF4 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 KRT18P57-201ENST00000443599 1254 ntBASIC14.23□□□□□ -0.13
CCDC140Q96MF4 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC14.23□□□□□ -0.13
CCDC140Q96MF4 GCSHP2-201ENST00000560971 527 ntBASIC14.23□□□□□ -0.13
CCDC140Q96MF4 TK2-213ENST00000563369 882 ntTSL 5 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms