Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00477Q96M19 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 AC068880.1-201ENST00000507289 2297 ntBASIC13.83□□□□□ -0.2
LINC00477Q96M19 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC13.83□□□□□ -0.2
LINC00477Q96M19 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00477Q96M19 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00477Q96M19 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LINC00477Q96M19 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00477Q96M19 AC093677.2-201ENST00000600169 1863 ntBASIC13.82□□□□□ -0.2
LINC00477Q96M19 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00477Q96M19 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00477Q96M19 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00477Q96M19 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00477Q96M19 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00477Q96M19 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00477Q96M19 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 MCCD1P1-208ENST00000445732 328 ntBASIC13.82□□□□□ -0.2
LINC00477Q96M19 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00477Q96M19 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 CD99P1-205ENST00000527459 561 ntBASIC13.82□□□□□ -0.2
LINC00477Q96M19 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 CFL2-205ENST00000555765 632 ntTSL 2 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00477Q96M19 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00477Q96M19 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00477Q96M19 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC13.82□□□□□ -0.2
LINC00477Q96M19 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LINC00477Q96M19 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 TK2-204ENST00000525974 1178 ntTSL 2 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 DGCR10-201ENST00000609839 495 ntBASIC13.81□□□□□ -0.2
LINC00477Q96M19 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 AC034236.2-201ENST00000606662 1610 ntBASIC13.81□□□□□ -0.2
LINC00477Q96M19 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
LINC00477Q96M19 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC13.81□□□□□ -0.2
LINC00477Q96M19 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
LINC00477Q96M19 AC138028.4-201ENST00000564984 1845 ntBASIC13.8□□□□□ -0.2
LINC00477Q96M19 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
LINC00477Q96M19 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
LINC00477Q96M19 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
LINC00477Q96M19 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 AC008764.6-201ENST00000595909 2069 ntBASIC13.8□□□□□ -0.2
LINC00477Q96M19 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
LINC00477Q96M19 CA15P1-201ENST00000481698 905 ntBASIC13.8□□□□□ -0.2
LINC00477Q96M19 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
LINC00477Q96M19 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC13.8□□□□□ -0.2
LINC00477Q96M19 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
LINC00477Q96M19 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LINC00477Q96M19 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC13.8□□□□□ -0.2
LINC00477Q96M19 AC096733.2-201ENST00000609937 1394 ntBASIC13.8□□□□□ -0.2
LINC00477Q96M19 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms