Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.64■□□□□ 0.41
VMP1Q96GC9 LIN28AP1-201ENST00000429574 405 ntBASIC17.64■□□□□ 0.41
VMP1Q96GC9 AL137013.1-201ENST00000432946 1228 ntBASIC17.64■□□□□ 0.41
VMP1Q96GC9 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.64■□□□□ 0.41
VMP1Q96GC9 FAM210CP-201ENST00000445714 574 ntBASIC17.64■□□□□ 0.41
VMP1Q96GC9 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.64■□□□□ 0.41
VMP1Q96GC9 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.64■□□□□ 0.41
VMP1Q96GC9 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.64■□□□□ 0.41
VMP1Q96GC9 FAM87A-204ENST00000613235 858 ntBASIC17.64■□□□□ 0.41
VMP1Q96GC9 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VMP1Q96GC9 PRORSD1P-202ENST00000563365 2154 ntBASIC17.64■□□□□ 0.41
VMP1Q96GC9 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.64■□□□□ 0.41
VMP1Q96GC9 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VMP1Q96GC9 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
VMP1Q96GC9 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
VMP1Q96GC9 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VMP1Q96GC9 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VMP1Q96GC9 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
VMP1Q96GC9 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.64■□□□□ 0.41
VMP1Q96GC9 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.64■□□□□ 0.41
VMP1Q96GC9 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.64■□□□□ 0.41
VMP1Q96GC9 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VMP1Q96GC9 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.63■□□□□ 0.41
VMP1Q96GC9 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.63■□□□□ 0.41
VMP1Q96GC9 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VMP1Q96GC9 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.63■□□□□ 0.41
VMP1Q96GC9 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VMP1Q96GC9 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
VMP1Q96GC9 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
VMP1Q96GC9 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VMP1Q96GC9 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.63■□□□□ 0.41
VMP1Q96GC9 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
VMP1Q96GC9 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.63■□□□□ 0.41
VMP1Q96GC9 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
VMP1Q96GC9 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.63■□□□□ 0.41
VMP1Q96GC9 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
VMP1Q96GC9 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VMP1Q96GC9 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VMP1Q96GC9 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VMP1Q96GC9 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.63■□□□□ 0.41
VMP1Q96GC9 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.63■□□□□ 0.41
VMP1Q96GC9 AC141586.3-201ENST00000562166 1838 ntBASIC17.63■□□□□ 0.41
VMP1Q96GC9 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.63■□□□□ 0.41
VMP1Q96GC9 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
VMP1Q96GC9 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
VMP1Q96GC9 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.62■□□□□ 0.41
VMP1Q96GC9 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 TERF1P1-201ENST00000311003 1181 ntBASIC17.62■□□□□ 0.41
VMP1Q96GC9 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
VMP1Q96GC9 AC005521.1-201ENST00000393351 872 ntBASIC17.62■□□□□ 0.41
VMP1Q96GC9 RCN1P1-201ENST00000400413 996 ntBASIC17.62■□□□□ 0.41
VMP1Q96GC9 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.62■□□□□ 0.41
VMP1Q96GC9 ATP5G1P1-201ENST00000448724 379 ntBASIC17.62■□□□□ 0.41
VMP1Q96GC9 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 KRT18P21-201ENST00000515767 1272 ntBASIC17.62■□□□□ 0.41
VMP1Q96GC9 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
VMP1Q96GC9 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.62■□□□□ 0.41
VMP1Q96GC9 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
VMP1Q96GC9 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.62■□□□□ 0.41
VMP1Q96GC9 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.62■□□□□ 0.41
VMP1Q96GC9 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
VMP1Q96GC9 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.62■□□□□ 0.41
VMP1Q96GC9 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VMP1Q96GC9 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
VMP1Q96GC9 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
VMP1Q96GC9 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VMP1Q96GC9 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VMP1Q96GC9 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VMP1Q96GC9 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 AP003041.3-201ENST00000527151 707 ntBASIC17.61■□□□□ 0.41
VMP1Q96GC9 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VMP1Q96GC9 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 AL512604.3-201ENST00000569583 964 ntBASIC17.61■□□□□ 0.41
VMP1Q96GC9 AC092865.7-201ENST00000641832 219 ntBASIC17.61■□□□□ 0.41
VMP1Q96GC9 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
VMP1Q96GC9 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.61■□□□□ 0.41
VMP1Q96GC9 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms