Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 AF228730.7-201ENST00000641842 219 ntBASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 PTGES2-AS1-201ENST00000443493 2100 ntBASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 AC005332.7-201ENST00000614046 2005 ntBASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 IL9RP2-201ENST00000423948 1312 ntBASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 RCN1P2-201ENST00000398357 915 ntBASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 POM121L3P-201ENST00000419331 1163 ntBASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 AC114341.1-201ENST00000618070 349 ntBASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC24.21■■□□□ 1.47
USHBP1Q8N6Y0 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
USHBP1Q8N6Y0 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
USHBP1Q8N6Y0 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC24.2■■□□□ 1.46
USHBP1Q8N6Y0 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC24.2■■□□□ 1.46
USHBP1Q8N6Y0 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
USHBP1Q8N6Y0 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC24.2■■□□□ 1.46
USHBP1Q8N6Y0 AP001005.1-201ENST00000571755 1248 ntBASIC24.2■■□□□ 1.46
USHBP1Q8N6Y0 AL049840.3-201ENST00000602669 611 ntBASIC24.2■■□□□ 1.46
USHBP1Q8N6Y0 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
USHBP1Q8N6Y0 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC24.2■■□□□ 1.46
USHBP1Q8N6Y0 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC24.2■■□□□ 1.46
USHBP1Q8N6Y0 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC24.2■■□□□ 1.46
USHBP1Q8N6Y0 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
USHBP1Q8N6Y0 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
USHBP1Q8N6Y0 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
USHBP1Q8N6Y0 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 AC116562.4-201ENST00000641316 2276 ntBASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 AC006538.3-201ENST00000612495 578 ntBASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC24.19■■□□□ 1.46
USHBP1Q8N6Y0 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 THAP5-204ENST00000438865 868 ntTSL 2 BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 AC068472.1-201ENST00000474589 881 ntBASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 AC008608.2-201ENST00000606089 416 ntBASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 GPALPP1-207ENST00000611650 899 ntBASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 AL773604.1-201ENST00000617417 272 ntBASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC24.18■■□□□ 1.46
USHBP1Q8N6Y0 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms