Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18■□□□□ 0.47
VRK3Q8IV63 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18■□□□□ 0.47
VRK3Q8IV63 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18■□□□□ 0.47
VRK3Q8IV63 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18■□□□□ 0.47
VRK3Q8IV63 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18■□□□□ 0.47
VRK3Q8IV63 FAM210CP-201ENST00000445714 574 ntBASIC18■□□□□ 0.47
VRK3Q8IV63 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 DUX4L26-201ENST00000489078 1255 ntBASIC18■□□□□ 0.47
VRK3Q8IV63 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18■□□□□ 0.47
VRK3Q8IV63 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18■□□□□ 0.47
VRK3Q8IV63 AC079602.3-201ENST00000623931 403 ntBASIC18■□□□□ 0.47
VRK3Q8IV63 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 BICD1-207ENST00000551848 1962 ntBASIC18■□□□□ 0.47
VRK3Q8IV63 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18■□□□□ 0.47
VRK3Q8IV63 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18■□□□□ 0.47
VRK3Q8IV63 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VRK3Q8IV63 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VRK3Q8IV63 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VRK3Q8IV63 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VRK3Q8IV63 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.99■□□□□ 0.47
VRK3Q8IV63 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.99■□□□□ 0.47
VRK3Q8IV63 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VRK3Q8IV63 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VRK3Q8IV63 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VRK3Q8IV63 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.99■□□□□ 0.47
VRK3Q8IV63 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VRK3Q8IV63 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VRK3Q8IV63 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VRK3Q8IV63 AL359075.1-203ENST00000462729 1002 ntBASIC17.99■□□□□ 0.47
VRK3Q8IV63 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.99■□□□□ 0.47
VRK3Q8IV63 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.99■□□□□ 0.47
VRK3Q8IV63 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VRK3Q8IV63 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VRK3Q8IV63 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
VRK3Q8IV63 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VRK3Q8IV63 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
VRK3Q8IV63 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VRK3Q8IV63 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
VRK3Q8IV63 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
VRK3Q8IV63 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.99■□□□□ 0.47
VRK3Q8IV63 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
VRK3Q8IV63 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.98■□□□□ 0.47
VRK3Q8IV63 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.98■□□□□ 0.47
VRK3Q8IV63 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.98■□□□□ 0.47
VRK3Q8IV63 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
VRK3Q8IV63 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
VRK3Q8IV63 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VRK3Q8IV63 LINC01126-201ENST00000623515 1646 ntBASIC17.98■□□□□ 0.47
VRK3Q8IV63 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
VRK3Q8IV63 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.97■□□□□ 0.47
VRK3Q8IV63 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
VRK3Q8IV63 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
VRK3Q8IV63 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VRK3Q8IV63 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VRK3Q8IV63 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VRK3Q8IV63 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
VRK3Q8IV63 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VRK3Q8IV63 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
VRK3Q8IV63 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
VRK3Q8IV63 AC135050.7-201ENST00000624508 2218 ntBASIC17.97■□□□□ 0.47
VRK3Q8IV63 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
VRK3Q8IV63 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.97■□□□□ 0.47
VRK3Q8IV63 STARP1-201ENST00000397973 869 ntBASIC17.97■□□□□ 0.47
VRK3Q8IV63 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.97■□□□□ 0.47
VRK3Q8IV63 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.97■□□□□ 0.47
VRK3Q8IV63 AC092597.1-201ENST00000487352 616 ntBASIC17.97■□□□□ 0.47
VRK3Q8IV63 AC063952.2-201ENST00000498792 1227 ntBASIC17.97■□□□□ 0.47
VRK3Q8IV63 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.97■□□□□ 0.47
VRK3Q8IV63 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms