Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 AC005082.1-201ENST00000413042 2259 ntBASIC12.77□□□□□ -0.36
CSMD3Q7Z407 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
CSMD3Q7Z407 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC12.77□□□□□ -0.36
CSMD3Q7Z407 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 ENSA-205ENST00000361532 792 ntTSL 2 BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 PAN3-AS1-201ENST00000563843 1351 ntBASIC12.77□□□□□ -0.37
CSMD3Q7Z407 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 FAM8A3P-201ENST00000427218 844 ntBASIC12.77□□□□□ -0.37
CSMD3Q7Z407 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CSMD3Q7Z407 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 HS6ST1P1-201ENST00000481504 1234 ntBASIC12.76□□□□□ -0.37
CSMD3Q7Z407 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 COPE-211ENST00000600932 1144 ntTSL 5 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 CAND2-206ENST00000626378 333 ntTSL 5 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 HLA-J-201ENST00000462773 1622 ntBASIC12.76□□□□□ -0.37
CSMD3Q7Z407 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 RPS8P6-201ENST00000426177 609 ntBASIC12.76□□□□□ -0.37
CSMD3Q7Z407 WBP2-203ENST00000433525 928 ntTSL 2 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 AC021087.4-201ENST00000563761 564 ntBASIC12.76□□□□□ -0.37
CSMD3Q7Z407 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CSMD3Q7Z407 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 DDT-206ENST00000430101 573 ntTSL 2 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
CSMD3Q7Z407 RCN1P2-201ENST00000398357 915 ntBASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms