Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.02■□□□□ 0.32
RNF4P78317 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF4P78317 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNF4P78317 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF4P78317 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNF4P78317 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
RNF4P78317 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.02■□□□□ 0.32
RNF4P78317 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.02■□□□□ 0.32
RNF4P78317 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.02■□□□□ 0.32
RNF4P78317 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF4P78317 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNF4P78317 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNF4P78317 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNF4P78317 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.02■□□□□ 0.32
RNF4P78317 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
RNF4P78317 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.02■□□□□ 0.32
RNF4P78317 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF4P78317 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.02■□□□□ 0.32
RNF4P78317 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.02■□□□□ 0.32
RNF4P78317 AC091076.1-201ENST00000610741 619 ntBASIC17.02■□□□□ 0.32
RNF4P78317 SDHAP2-201ENST00000455183 2001 ntBASIC17.02■□□□□ 0.32
RNF4P78317 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
RNF4P78317 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
RNF4P78317 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.02■□□□□ 0.31
RNF4P78317 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
RNF4P78317 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.31
RNF4P78317 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RNF4P78317 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.02■□□□□ 0.31
RNF4P78317 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RNF4P78317 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
RNF4P78317 AC126763.1-201ENST00000552015 2118 ntBASIC17.02■□□□□ 0.31
RNF4P78317 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
RNF4P78317 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.02■□□□□ 0.31
RNF4P78317 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
RNF4P78317 AC005082.1-201ENST00000413042 2259 ntBASIC17.01■□□□□ 0.31
RNF4P78317 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
RNF4P78317 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF4P78317 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.01■□□□□ 0.31
RNF4P78317 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
RNF4P78317 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNF4P78317 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF4P78317 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF4P78317 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF4P78317 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.01■□□□□ 0.31
RNF4P78317 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF4P78317 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNF4P78317 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.01■□□□□ 0.31
RNF4P78317 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.01■□□□□ 0.31
RNF4P78317 AL645929.1-201ENST00000420084 975 ntBASIC17.01■□□□□ 0.31
RNF4P78317 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.01■□□□□ 0.31
RNF4P78317 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.01■□□□□ 0.31
RNF4P78317 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
RNF4P78317 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.01■□□□□ 0.31
RNF4P78317 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.01■□□□□ 0.31
RNF4P78317 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF4P78317 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNF4P78317 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF4P78317 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.01■□□□□ 0.31
RNF4P78317 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF4P78317 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
RNF4P78317 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
RNF4P78317 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17■□□□□ 0.31
RNF4P78317 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
RNF4P78317 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RNF4P78317 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
RNF4P78317 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RNF4P78317 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17■□□□□ 0.31
RNF4P78317 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RNF4P78317 MIR662-201ENST00000384847 95 ntBASIC17■□□□□ 0.31
RNF4P78317 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17■□□□□ 0.31
RNF4P78317 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RNF4P78317 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17■□□□□ 0.31
RNF4P78317 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17■□□□□ 0.31
RNF4P78317 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
RNF4P78317 AC116407.4-201ENST00000623319 1061 ntBASIC17■□□□□ 0.31
RNF4P78317 AP000550.4-202ENST00000639755 178 ntBASIC17■□□□□ 0.31
RNF4P78317 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17■□□□□ 0.31
RNF4P78317 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
RNF4P78317 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RNF4P78317 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17■□□□□ 0.31
RNF4P78317 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17■□□□□ 0.31
RNF4P78317 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17■□□□□ 0.31
RNF4P78317 IER3-202ENST00000376377 1350 ntBASIC17■□□□□ 0.31
RNF4P78317 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
RNF4P78317 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
RNF4P78317 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RNF4P78317 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
RNF4P78317 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RNF4P78317 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.99■□□□□ 0.31
RNF4P78317 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.99■□□□□ 0.31
RNF4P78317 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.99■□□□□ 0.31
RNF4P78317 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RNF4P78317 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.99■□□□□ 0.31
RNF4P78317 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
RNF4P78317 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
RNF4P78317 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
RNF4P78317 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC16.99■□□□□ 0.31
RNF4P78317 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF4P78317 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RNF4P78317 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms