Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN1P58418 CR769767.2-201ENST00000622735 460 ntBASIC16.47■□□□□ 0.23
CLRN1P58418 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN1P58418 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
CLRN1P58418 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN1P58418 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
CLRN1P58418 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN1P58418 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN1P58418 CYP2D8P-201ENST00000433633 1490 ntBASIC16.47■□□□□ 0.23
CLRN1P58418 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.47■□□□□ 0.23
CLRN1P58418 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN1P58418 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN1P58418 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN1P58418 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.46■□□□□ 0.23
CLRN1P58418 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.46■□□□□ 0.23
CLRN1P58418 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CLRN1P58418 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.46■□□□□ 0.23
CLRN1P58418 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
CLRN1P58418 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.46■□□□□ 0.23
CLRN1P58418 KRT18P23-201ENST00000435622 1283 ntBASIC16.46■□□□□ 0.23
CLRN1P58418 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.46■□□□□ 0.23
CLRN1P58418 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CLRN1P58418 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CLRN1P58418 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.46■□□□□ 0.23
CLRN1P58418 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CLRN1P58418 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.46■□□□□ 0.23
CLRN1P58418 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.46■□□□□ 0.23
CLRN1P58418 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.46■□□□□ 0.23
CLRN1P58418 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN1P58418 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CLRN1P58418 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CLRN1P58418 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CLRN1P58418 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
CLRN1P58418 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
CLRN1P58418 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC16.45■□□□□ 0.22
CLRN1P58418 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CLRN1P58418 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.45■□□□□ 0.22
CLRN1P58418 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.45■□□□□ 0.22
CLRN1P58418 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CLRN1P58418 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.45■□□□□ 0.22
CLRN1P58418 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.45■□□□□ 0.22
CLRN1P58418 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.45■□□□□ 0.22
CLRN1P58418 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.45■□□□□ 0.22
CLRN1P58418 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.45■□□□□ 0.22
CLRN1P58418 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 AC010947.1-201ENST00000623454 693 ntBASIC16.45■□□□□ 0.22
CLRN1P58418 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.45■□□□□ 0.22
CLRN1P58418 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.45■□□□□ 0.22
CLRN1P58418 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN1P58418 KRT8P50-201ENST00000562022 1438 ntBASIC16.45■□□□□ 0.22
CLRN1P58418 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.44■□□□□ 0.22
CLRN1P58418 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
CLRN1P58418 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CLRN1P58418 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CLRN1P58418 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.44■□□□□ 0.22
CLRN1P58418 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.44■□□□□ 0.22
CLRN1P58418 AC135050.7-201ENST00000624508 2218 ntBASIC16.44■□□□□ 0.22
CLRN1P58418 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.44■□□□□ 0.22
CLRN1P58418 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN1P58418 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.44■□□□□ 0.22
CLRN1P58418 WWOX-216ENST00000569818 525 ntBASIC16.44■□□□□ 0.22
CLRN1P58418 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.44■□□□□ 0.22
CLRN1P58418 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms