Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
EPHB3P54753 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
EPHB3P54753 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
EPHB3P54753 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
EPHB3P54753 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
EPHB3P54753 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
EPHB3P54753 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
EPHB3P54753 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.21■□□□□ 0.67
EPHB3P54753 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.21■□□□□ 0.67
EPHB3P54753 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
EPHB3P54753 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
EPHB3P54753 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.21■□□□□ 0.67
EPHB3P54753 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.21■□□□□ 0.67
EPHB3P54753 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.21■□□□□ 0.67
EPHB3P54753 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.21■□□□□ 0.67
EPHB3P54753 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.21■□□□□ 0.67
EPHB3P54753 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
EPHB3P54753 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.21■□□□□ 0.67
EPHB3P54753 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
EPHB3P54753 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
EPHB3P54753 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.21■□□□□ 0.67
EPHB3P54753 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
EPHB3P54753 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
EPHB3P54753 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.21■□□□□ 0.67
EPHB3P54753 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
EPHB3P54753 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.2■□□□□ 0.66
EPHB3P54753 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.2■□□□□ 0.66
EPHB3P54753 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.2■□□□□ 0.66
EPHB3P54753 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
EPHB3P54753 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
EPHB3P54753 IGHV3-47-201ENST00000425060 335 ntBASIC19.2■□□□□ 0.66
EPHB3P54753 AC246785.2-201ENST00000432512 513 ntBASIC19.2■□□□□ 0.66
EPHB3P54753 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.2■□□□□ 0.66
EPHB3P54753 EMBP1-201ENST00000458200 901 ntBASIC19.2■□□□□ 0.66
EPHB3P54753 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.2■□□□□ 0.66
EPHB3P54753 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
EPHB3P54753 AC113404.2-201ENST00000507884 177 ntBASIC19.2■□□□□ 0.66
EPHB3P54753 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.2■□□□□ 0.66
EPHB3P54753 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.2■□□□□ 0.66
EPHB3P54753 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.2■□□□□ 0.66
EPHB3P54753 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.2■□□□□ 0.66
EPHB3P54753 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
EPHB3P54753 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
EPHB3P54753 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
EPHB3P54753 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
EPHB3P54753 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.19■□□□□ 0.66
EPHB3P54753 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.19■□□□□ 0.66
EPHB3P54753 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
EPHB3P54753 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.19■□□□□ 0.66
EPHB3P54753 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.19■□□□□ 0.66
EPHB3P54753 MINOS1P3-201ENST00000457048 203 ntBASIC19.19■□□□□ 0.66
EPHB3P54753 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
EPHB3P54753 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
EPHB3P54753 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.19■□□□□ 0.66
EPHB3P54753 NSUN5P1-202ENST00000421140 1535 ntBASIC19.19■□□□□ 0.66
EPHB3P54753 NSUN5P2-203ENST00000457352 1529 ntBASIC19.19■□□□□ 0.66
EPHB3P54753 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
EPHB3P54753 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.19■□□□□ 0.66
EPHB3P54753 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.19■□□□□ 0.66
EPHB3P54753 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
EPHB3P54753 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
EPHB3P54753 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
EPHB3P54753 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
EPHB3P54753 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
EPHB3P54753 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
EPHB3P54753 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
EPHB3P54753 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
EPHB3P54753 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms