Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 AL023284.2-201ENST00000405850 579 ntBASIC17.32■□□□□ 0.36
RFX3P48380 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.32■□□□□ 0.36
RFX3P48380 CA15P1-201ENST00000481698 905 ntBASIC17.32■□□□□ 0.36
RFX3P48380 AP003041.3-201ENST00000527151 707 ntBASIC17.32■□□□□ 0.36
RFX3P48380 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.32■□□□□ 0.36
RFX3P48380 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.32■□□□□ 0.36
RFX3P48380 AC116562.4-202ENST00000641738 218 ntBASIC17.32■□□□□ 0.36
RFX3P48380 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.32■□□□□ 0.36
RFX3P48380 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.32■□□□□ 0.36
RFX3P48380 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.32■□□□□ 0.36
RFX3P48380 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
RFX3P48380 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
RFX3P48380 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX3P48380 AC099343.3-201ENST00000605834 2503 ntBASIC17.31■□□□□ 0.36
RFX3P48380 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
RFX3P48380 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.31■□□□□ 0.36
RFX3P48380 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.31■□□□□ 0.36
RFX3P48380 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.31■□□□□ 0.36
RFX3P48380 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.31■□□□□ 0.36
RFX3P48380 SLC25A1P2-201ENST00000430693 912 ntBASIC17.31■□□□□ 0.36
RFX3P48380 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
RFX3P48380 BX088651.1-201ENST00000540551 451 ntBASIC17.31■□□□□ 0.36
RFX3P48380 AC126763.1-201ENST00000552015 2118 ntBASIC17.31■□□□□ 0.36
RFX3P48380 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.31■□□□□ 0.36
RFX3P48380 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.31■□□□□ 0.36
RFX3P48380 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.31■□□□□ 0.36
RFX3P48380 AC007613.1-201ENST00000572811 2597 ntBASIC17.31■□□□□ 0.36
RFX3P48380 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX3P48380 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.3■□□□□ 0.36
RFX3P48380 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
RFX3P48380 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
RFX3P48380 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
RFX3P48380 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.3■□□□□ 0.36
RFX3P48380 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFX3P48380 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.3■□□□□ 0.36
RFX3P48380 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
RFX3P48380 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFX3P48380 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
RFX3P48380 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFX3P48380 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.3■□□□□ 0.36
RFX3P48380 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.3■□□□□ 0.36
RFX3P48380 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.3■□□□□ 0.36
RFX3P48380 TSPY17P-201ENST00000450329 467 ntBASIC17.3■□□□□ 0.36
RFX3P48380 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.3■□□□□ 0.36
RFX3P48380 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.3■□□□□ 0.36
RFX3P48380 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.3■□□□□ 0.36
RFX3P48380 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RFX3P48380 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.3■□□□□ 0.36
RFX3P48380 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFX3P48380 AC036111.1-201ENST00000533973 1582 ntBASIC17.3■□□□□ 0.36
RFX3P48380 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RFX3P48380 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.3■□□□□ 0.36
RFX3P48380 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFX3P48380 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFX3P48380 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
RFX3P48380 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFX3P48380 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFX3P48380 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
RFX3P48380 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.29■□□□□ 0.36
RFX3P48380 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.29■□□□□ 0.36
RFX3P48380 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
RFX3P48380 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.29■□□□□ 0.36
RFX3P48380 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 INGX-201ENST00000359239 846 ntBASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms