Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
PTPN9P43378 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN9P43378 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN9P43378 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PTPN9P43378 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
PTPN9P43378 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
PTPN9P43378 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
PTPN9P43378 AL024508.2-201ENST00000607749 1894 ntBASIC19.14■□□□□ 0.65
PTPN9P43378 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.13■□□□□ 0.65
PTPN9P43378 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN9P43378 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.13■□□□□ 0.65
PTPN9P43378 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.13■□□□□ 0.65
PTPN9P43378 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.13■□□□□ 0.65
PTPN9P43378 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN9P43378 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
PTPN9P43378 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.13■□□□□ 0.65
PTPN9P43378 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.13■□□□□ 0.65
PTPN9P43378 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.13■□□□□ 0.65
PTPN9P43378 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.13■□□□□ 0.65
PTPN9P43378 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
PTPN9P43378 AC006011.2-201ENST00000621313 1158 ntBASIC19.13■□□□□ 0.65
PTPN9P43378 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN9P43378 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN9P43378 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN9P43378 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN9P43378 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.13■□□□□ 0.65
PTPN9P43378 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN9P43378 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN9P43378 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN9P43378 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
PTPN9P43378 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
PTPN9P43378 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.13■□□□□ 0.65
PTPN9P43378 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
PTPN9P43378 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN9P43378 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN9P43378 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.12■□□□□ 0.65
PTPN9P43378 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN9P43378 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN9P43378 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
PTPN9P43378 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.12■□□□□ 0.65
PTPN9P43378 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN9P43378 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN9P43378 RASA4DP-201ENST00000460726 1199 ntBASIC19.12■□□□□ 0.65
PTPN9P43378 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.12■□□□□ 0.65
PTPN9P43378 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.12■□□□□ 0.65
PTPN9P43378 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
PTPN9P43378 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
PTPN9P43378 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.12■□□□□ 0.65
PTPN9P43378 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN9P43378 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN9P43378 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN9P43378 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN9P43378 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.12■□□□□ 0.65
PTPN9P43378 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
PTPN9P43378 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN9P43378 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.12■□□□□ 0.65
PTPN9P43378 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PTPN9P43378 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN9P43378 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.11■□□□□ 0.65
PTPN9P43378 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
PTPN9P43378 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN9P43378 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.11■□□□□ 0.65
PTPN9P43378 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN9P43378 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.11■□□□□ 0.65
PTPN9P43378 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.11■□□□□ 0.65
PTPN9P43378 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN9P43378 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN9P43378 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN9P43378 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN9P43378 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
PTPN9P43378 RNF152P1-201ENST00000397754 604 ntBASIC19.11■□□□□ 0.65
PTPN9P43378 STARP1-201ENST00000397973 869 ntBASIC19.11■□□□□ 0.65
PTPN9P43378 RCN1P1-201ENST00000400413 996 ntBASIC19.11■□□□□ 0.65
PTPN9P43378 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.11■□□□□ 0.65
PTPN9P43378 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.11■□□□□ 0.65
PTPN9P43378 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.11■□□□□ 0.65
PTPN9P43378 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
PTPN9P43378 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN9P43378 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN9P43378 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN9P43378 AL390961.4-201ENST00000623958 2535 ntBASIC19.11■□□□□ 0.65
PTPN9P43378 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN9P43378 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
PTPN9P43378 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN9P43378 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PTPN9P43378 LINC01126-201ENST00000623515 1646 ntBASIC19.11■□□□□ 0.65
PTPN9P43378 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN9P43378 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.1■□□□□ 0.65
PTPN9P43378 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.1■□□□□ 0.65
PTPN9P43378 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN9P43378 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN9P43378 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.1■□□□□ 0.65
PTPN9P43378 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.1■□□□□ 0.65
PTPN9P43378 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN9P43378 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
PTPN9P43378 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN9P43378 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN9P43378 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN9P43378 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTPN9P43378 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms