Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
PTPN4P29074 HTR7P1-202ENST00000624664 4411 ntBASIC18.5■□□□□ 0.55
PTPN4P29074 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.5■□□□□ 0.55
PTPN4P29074 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
PTPN4P29074 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PTPN4P29074 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 SDHAP1-207ENST00000440850 2000 ntBASIC18.49■□□□□ 0.55
PTPN4P29074 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.49■□□□□ 0.55
PTPN4P29074 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
PTPN4P29074 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.49■□□□□ 0.55
PTPN4P29074 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.49■□□□□ 0.55
PTPN4P29074 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.49■□□□□ 0.55
PTPN4P29074 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.49■□□□□ 0.55
PTPN4P29074 YBX1P10-201ENST00000444752 975 ntBASIC18.49■□□□□ 0.55
PTPN4P29074 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.49■□□□□ 0.55
PTPN4P29074 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.49■□□□□ 0.55
PTPN4P29074 FITM1-202ENST00000559294 800 ntBASIC18.49■□□□□ 0.55
PTPN4P29074 NAPSB-206ENST00000562112 1266 ntBASIC18.49■□□□□ 0.55
PTPN4P29074 RN7SL850P-201ENST00000579959 291 ntBASIC18.49■□□□□ 0.55
PTPN4P29074 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 AC018553.1-201ENST00000616682 1458 ntBASIC18.49■□□□□ 0.55
PTPN4P29074 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.49■□□□□ 0.55
PTPN4P29074 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.49■□□□□ 0.55
PTPN4P29074 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.49■□□□□ 0.55
PTPN4P29074 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.49■□□□□ 0.55
PTPN4P29074 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PTPN4P29074 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
PTPN4P29074 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.49■□□□□ 0.55
PTPN4P29074 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.49■□□□□ 0.55
PTPN4P29074 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN4P29074 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.48■□□□□ 0.55
PTPN4P29074 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN4P29074 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN4P29074 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.48■□□□□ 0.55
PTPN4P29074 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN4P29074 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN4P29074 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
PTPN4P29074 LINC01568-207ENST00000641790 1380 ntBASIC18.48■□□□□ 0.55
PTPN4P29074 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN4P29074 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN4P29074 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.48■□□□□ 0.55
PTPN4P29074 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN4P29074 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN4P29074 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN4P29074 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN4P29074 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN4P29074 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.48■□□□□ 0.55
PTPN4P29074 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN4P29074 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTPN4P29074 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.48■□□□□ 0.55
PTPN4P29074 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN4P29074 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN4P29074 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.47■□□□□ 0.55
PTPN4P29074 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.47■□□□□ 0.55
PTPN4P29074 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
PTPN4P29074 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN4P29074 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN4P29074 FEM1AP3-201ENST00000403722 1741 ntBASIC18.47■□□□□ 0.55
PTPN4P29074 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN4P29074 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN4P29074 AL390955.1-201ENST00000428694 934 ntBASIC18.47■□□□□ 0.55
PTPN4P29074 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN4P29074 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.47■□□□□ 0.55
PTPN4P29074 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
PTPN4P29074 AC026271.3-201ENST00000571884 352 ntBASIC18.47■□□□□ 0.55
PTPN4P29074 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.47■□□□□ 0.55
PTPN4P29074 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.47■□□□□ 0.55
PTPN4P29074 AL445675.2-201ENST00000620291 557 ntBASIC18.47■□□□□ 0.55
PTPN4P29074 AC092865.7-201ENST00000641832 219 ntBASIC18.47■□□□□ 0.55
PTPN4P29074 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.47■□□□□ 0.55
PTPN4P29074 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
PTPN4P29074 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN4P29074 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN4P29074 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
PTPN4P29074 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN4P29074 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
PTPN4P29074 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN4P29074 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTPN4P29074 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.46■□□□□ 0.55
PTPN4P29074 FSCN1P1-201ENST00000568912 1481 ntBASIC18.46■□□□□ 0.55
PTPN4P29074 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms