Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL8A1P27658 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
COL8A1P27658 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL8A1P27658 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC16.05■□□□□ 0.16
COL8A1P27658 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
COL8A1P27658 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
COL8A1P27658 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.05■□□□□ 0.16
COL8A1P27658 AC021087.4-201ENST00000563761 564 ntBASIC16.05■□□□□ 0.16
COL8A1P27658 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.05■□□□□ 0.16
COL8A1P27658 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
COL8A1P27658 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL8A1P27658 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.05■□□□□ 0.16
COL8A1P27658 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL8A1P27658 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
COL8A1P27658 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
COL8A1P27658 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC16.05■□□□□ 0.16
COL8A1P27658 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.05■□□□□ 0.16
COL8A1P27658 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC16.04■□□□□ 0.16
COL8A1P27658 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.04■□□□□ 0.16
COL8A1P27658 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
COL8A1P27658 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC16.04■□□□□ 0.16
COL8A1P27658 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
COL8A1P27658 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC16.04■□□□□ 0.16
COL8A1P27658 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
COL8A1P27658 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
COL8A1P27658 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.04■□□□□ 0.16
COL8A1P27658 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.04■□□□□ 0.16
COL8A1P27658 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.04■□□□□ 0.16
COL8A1P27658 HLA-J-203ENST00000494367 1087 ntBASIC16.04■□□□□ 0.16
COL8A1P27658 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
COL8A1P27658 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
COL8A1P27658 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
COL8A1P27658 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL8A1P27658 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC16.03■□□□□ 0.16
COL8A1P27658 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.03■□□□□ 0.16
COL8A1P27658 KRT8P3-201ENST00000519669 1449 ntBASIC16.03■□□□□ 0.16
COL8A1P27658 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.03■□□□□ 0.16
COL8A1P27658 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
COL8A1P27658 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
COL8A1P27658 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
COL8A1P27658 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
COL8A1P27658 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.03■□□□□ 0.16
COL8A1P27658 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.03■□□□□ 0.16
COL8A1P27658 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.03■□□□□ 0.16
COL8A1P27658 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.03■□□□□ 0.16
COL8A1P27658 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.03■□□□□ 0.16
COL8A1P27658 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.03■□□□□ 0.16
COL8A1P27658 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.03■□□□□ 0.16
COL8A1P27658 HLA-J-201ENST00000462773 1622 ntBASIC16.03■□□□□ 0.16
COL8A1P27658 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.03■□□□□ 0.16
COL8A1P27658 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC16.03■□□□□ 0.16
COL8A1P27658 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.03■□□□□ 0.16
COL8A1P27658 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC16.03■□□□□ 0.16
COL8A1P27658 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
COL8A1P27658 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL8A1P27658 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC16.03■□□□□ 0.16
COL8A1P27658 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL8A1P27658 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.02■□□□□ 0.16
COL8A1P27658 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
COL8A1P27658 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL8A1P27658 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.02■□□□□ 0.16
COL8A1P27658 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL8A1P27658 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.02■□□□□ 0.16
COL8A1P27658 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
COL8A1P27658 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL8A1P27658 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL8A1P27658 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
COL8A1P27658 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
COL8A1P27658 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms