Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
COL11A1P12107 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL11A1P12107 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL11A1P12107 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL11A1P12107 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL11A1P12107 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.87■□□□□ 0.93
COL11A1P12107 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
COL11A1P12107 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.86■□□□□ 0.93
COL11A1P12107 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL11A1P12107 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL11A1P12107 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL11A1P12107 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
COL11A1P12107 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC20.86■□□□□ 0.93
COL11A1P12107 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.86■□□□□ 0.93
COL11A1P12107 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.86■□□□□ 0.93
COL11A1P12107 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.86■□□□□ 0.93
COL11A1P12107 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.86■□□□□ 0.93
COL11A1P12107 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
COL11A1P12107 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.86■□□□□ 0.93
COL11A1P12107 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.86■□□□□ 0.93
COL11A1P12107 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.86■□□□□ 0.93
COL11A1P12107 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.86■□□□□ 0.93
COL11A1P12107 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.86■□□□□ 0.93
COL11A1P12107 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL11A1P12107 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL11A1P12107 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
COL11A1P12107 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL11A1P12107 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
COL11A1P12107 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 FAM197Y8-203ENST00000450145 560 ntBASIC20.85■□□□□ 0.93
COL11A1P12107 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
COL11A1P12107 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
COL11A1P12107 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.85■□□□□ 0.93
COL11A1P12107 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
COL11A1P12107 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.85■□□□□ 0.93
COL11A1P12107 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.85■□□□□ 0.93
COL11A1P12107 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.85■□□□□ 0.93
COL11A1P12107 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.85■□□□□ 0.93
COL11A1P12107 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
COL11A1P12107 SLC25A1P1-201ENST00000528351 927 ntBASIC20.85■□□□□ 0.93
COL11A1P12107 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.85■□□□□ 0.93
COL11A1P12107 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.85■□□□□ 0.93
COL11A1P12107 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.85■□□□□ 0.93
COL11A1P12107 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
COL11A1P12107 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.85■□□□□ 0.93
COL11A1P12107 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL11A1P12107 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL11A1P12107 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL11A1P12107 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL11A1P12107 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL11A1P12107 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.84■□□□□ 0.93
COL11A1P12107 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
COL11A1P12107 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL11A1P12107 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
COL11A1P12107 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
COL11A1P12107 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC20.84■□□□□ 0.93
COL11A1P12107 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.84■□□□□ 0.93
COL11A1P12107 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL11A1P12107 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL11A1P12107 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.84■□□□□ 0.93
COL11A1P12107 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL11A1P12107 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.84■□□□□ 0.93
COL11A1P12107 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL11A1P12107 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL11A1P12107 AC112777.1-201ENST00000540175 1423 ntBASIC20.83■□□□□ 0.93
COL11A1P12107 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL11A1P12107 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.83■□□□□ 0.93
COL11A1P12107 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL11A1P12107 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
COL11A1P12107 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.83■□□□□ 0.93
COL11A1P12107 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
COL11A1P12107 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL11A1P12107 AC079776.4-201ENST00000511039 504 ntBASIC20.83■□□□□ 0.93
COL11A1P12107 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.83■□□□□ 0.93
COL11A1P12107 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20.83■□□□□ 0.93
COL11A1P12107 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL11A1P12107 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.83■□□□□ 0.93
COL11A1P12107 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL11A1P12107 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.83■□□□□ 0.93
COL11A1P12107 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL11A1P12107 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.83■□□□□ 0.93
COL11A1P12107 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.92
COL11A1P12107 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.83■□□□□ 0.92
COL11A1P12107 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL11A1P12107 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL11A1P12107 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
COL11A1P12107 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms