Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.31■□□□□ 0.84
TPM1P09493 Z85996.1-201ENST00000494644 937 ntBASIC20.31■□□□□ 0.84
TPM1P09493 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TPM1P09493 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TPM1P09493 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.31■□□□□ 0.84
TPM1P09493 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.31■□□□□ 0.84
TPM1P09493 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TPM1P09493 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TPM1P09493 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
TPM1P09493 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TPM1P09493 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TPM1P09493 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
TPM1P09493 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TPM1P09493 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TPM1P09493 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.3■□□□□ 0.84
TPM1P09493 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
TPM1P09493 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.3■□□□□ 0.84
TPM1P09493 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.3■□□□□ 0.84
TPM1P09493 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.3■□□□□ 0.84
TPM1P09493 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.3■□□□□ 0.84
TPM1P09493 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
TPM1P09493 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.3■□□□□ 0.84
TPM1P09493 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.3■□□□□ 0.84
TPM1P09493 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.3■□□□□ 0.84
TPM1P09493 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.3■□□□□ 0.84
TPM1P09493 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
TPM1P09493 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC20.3■□□□□ 0.84
TPM1P09493 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.3■□□□□ 0.84
TPM1P09493 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
TPM1P09493 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TPM1P09493 AC138028.4-201ENST00000564984 1845 ntBASIC20.3■□□□□ 0.84
TPM1P09493 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TPM1P09493 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TPM1P09493 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.29■□□□□ 0.84
TPM1P09493 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
TPM1P09493 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM1P09493 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TPM1P09493 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
TPM1P09493 AC093677.2-201ENST00000600169 1863 ntBASIC20.29■□□□□ 0.84
TPM1P09493 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.29■□□□□ 0.84
TPM1P09493 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TPM1P09493 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TPM1P09493 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.29■□□□□ 0.84
TPM1P09493 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.29■□□□□ 0.84
TPM1P09493 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TPM1P09493 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
TPM1P09493 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.29■□□□□ 0.84
TPM1P09493 AC131212.4-201ENST00000623606 975 ntBASIC20.29■□□□□ 0.84
TPM1P09493 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.29■□□□□ 0.84
TPM1P09493 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
TPM1P09493 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.29■□□□□ 0.84
TPM1P09493 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC20.29■□□□□ 0.84
TPM1P09493 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
TPM1P09493 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM1P09493 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.29■□□□□ 0.84
TPM1P09493 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.29■□□□□ 0.84
TPM1P09493 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM1P09493 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC20.29■□□□□ 0.84
TPM1P09493 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.29■□□□□ 0.84
TPM1P09493 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
TPM1P09493 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.28■□□□□ 0.84
TPM1P09493 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.28■□□□□ 0.84
TPM1P09493 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.28■□□□□ 0.84
TPM1P09493 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
TPM1P09493 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM1P09493 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms