Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SPTA1P02549 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
SPTA1P02549 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC16.65■□□□□ 0.26
SPTA1P02549 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SPTA1P02549 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.65■□□□□ 0.26
SPTA1P02549 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SPTA1P02549 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SPTA1P02549 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SPTA1P02549 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC16.65■□□□□ 0.26
SPTA1P02549 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SPTA1P02549 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SPTA1P02549 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.65■□□□□ 0.26
SPTA1P02549 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.65■□□□□ 0.26
SPTA1P02549 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.65■□□□□ 0.26
SPTA1P02549 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.65■□□□□ 0.26
SPTA1P02549 AL035252.4-201ENST00000624174 288 ntBASIC16.65■□□□□ 0.26
SPTA1P02549 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.65■□□□□ 0.26
SPTA1P02549 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
SPTA1P02549 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.64■□□□□ 0.26
SPTA1P02549 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SPTA1P02549 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SPTA1P02549 TP73-AS1-210ENST00000637775 1455 ntBASIC16.64■□□□□ 0.25
SPTA1P02549 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SPTA1P02549 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SPTA1P02549 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.64■□□□□ 0.25
SPTA1P02549 AC020907.5-201ENST00000624372 1936 ntBASIC16.64■□□□□ 0.25
SPTA1P02549 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
SPTA1P02549 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.64■□□□□ 0.25
SPTA1P02549 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.64■□□□□ 0.25
SPTA1P02549 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SPTA1P02549 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.64■□□□□ 0.25
SPTA1P02549 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.64■□□□□ 0.25
SPTA1P02549 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.64■□□□□ 0.25
SPTA1P02549 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.64■□□□□ 0.25
SPTA1P02549 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.64■□□□□ 0.25
SPTA1P02549 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.64■□□□□ 0.25
SPTA1P02549 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC16.64■□□□□ 0.25
SPTA1P02549 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.64■□□□□ 0.25
SPTA1P02549 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SPTA1P02549 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SPTA1P02549 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SPTA1P02549 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SPTA1P02549 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SPTA1P02549 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SPTA1P02549 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SPTA1P02549 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.64■□□□□ 0.25
SPTA1P02549 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.64■□□□□ 0.25
SPTA1P02549 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.64■□□□□ 0.25
SPTA1P02549 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.64■□□□□ 0.25
SPTA1P02549 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.64■□□□□ 0.25
SPTA1P02549 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.63■□□□□ 0.25
SPTA1P02549 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC16.63■□□□□ 0.25
SPTA1P02549 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SPTA1P02549 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SPTA1P02549 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.63■□□□□ 0.25
SPTA1P02549 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16.63■□□□□ 0.25
SPTA1P02549 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SPTA1P02549 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC16.63■□□□□ 0.25
SPTA1P02549 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC16.63■□□□□ 0.25
SPTA1P02549 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.63■□□□□ 0.25
SPTA1P02549 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SPTA1P02549 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SPTA1P02549 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SPTA1P02549 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.63■□□□□ 0.25
SPTA1P02549 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.63■□□□□ 0.25
SPTA1P02549 MCCD1P2-201ENST00000423228 335 ntBASIC16.63■□□□□ 0.25
SPTA1P02549 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.63■□□□□ 0.25
SPTA1P02549 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.63■□□□□ 0.25
SPTA1P02549 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.63■□□□□ 0.25
SPTA1P02549 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SPTA1P02549 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC16.63■□□□□ 0.25
SPTA1P02549 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.63■□□□□ 0.25
SPTA1P02549 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SPTA1P02549 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.63■□□□□ 0.25
SPTA1P02549 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SPTA1P02549 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SPTA1P02549 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.62■□□□□ 0.25
SPTA1P02549 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.62■□□□□ 0.25
SPTA1P02549 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.62■□□□□ 0.25
SPTA1P02549 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.62■□□□□ 0.25
SPTA1P02549 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.62■□□□□ 0.25
SPTA1P02549 AC012640.2-201ENST00000561606 901 ntBASIC16.62■□□□□ 0.25
SPTA1P02549 AC021087.4-201ENST00000563761 564 ntBASIC16.62■□□□□ 0.25
SPTA1P02549 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SPTA1P02549 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.62■□□□□ 0.25
SPTA1P02549 MTDHP5-201ENST00000598980 586 ntBASIC16.62■□□□□ 0.25
SPTA1P02549 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.62■□□□□ 0.25
SPTA1P02549 AL139288.1-201ENST00000623748 933 ntBASIC16.62■□□□□ 0.25
SPTA1P02549 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.62■□□□□ 0.25
SPTA1P02549 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SPTA1P02549 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SPTA1P02549 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC16.62■□□□□ 0.25
SPTA1P02549 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.62■□□□□ 0.25
SPTA1P02549 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SPTA1P02549 RCC2P3-201ENST00000418112 1537 ntBASIC16.62■□□□□ 0.25
SPTA1P02549 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.62■□□□□ 0.25
SPTA1P02549 AC190387.1-201ENST00000551683 408 ntBASIC16.62■□□□□ 0.25
SPTA1P02549 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.62■□□□□ 0.25
SPTA1P02549 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SPTA1P02549 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms