Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.98■□□□□ 0.47
TNFP01375 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.98■□□□□ 0.47
TNFP01375 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TNFP01375 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
TNFP01375 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
TNFP01375 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TNFP01375 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
TNFP01375 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.97■□□□□ 0.47
TNFP01375 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.97■□□□□ 0.47
TNFP01375 AC012615.1-201ENST00000565797 1299 ntBASIC17.97■□□□□ 0.47
TNFP01375 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
TNFP01375 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
TNFP01375 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
TNFP01375 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
TNFP01375 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
TNFP01375 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
TNFP01375 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.96■□□□□ 0.47
TNFP01375 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.96■□□□□ 0.47
TNFP01375 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TNFP01375 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TNFP01375 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TNFP01375 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
TNFP01375 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.96■□□□□ 0.47
TNFP01375 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TNFP01375 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TNFP01375 AC104819.1-201ENST00000504587 486 ntBASIC17.96■□□□□ 0.47
TNFP01375 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.96■□□□□ 0.47
TNFP01375 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.96■□□□□ 0.47
TNFP01375 Z69720.1-201ENST00000601483 472 ntBASIC17.96■□□□□ 0.47
TNFP01375 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TNFP01375 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TNFP01375 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.96■□□□□ 0.47
TNFP01375 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.96■□□□□ 0.47
TNFP01375 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.96■□□□□ 0.47
TNFP01375 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
TNFP01375 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TNFP01375 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TNFP01375 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TNFP01375 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
TNFP01375 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
TNFP01375 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.96■□□□□ 0.46
TNFP01375 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
TNFP01375 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
TNFP01375 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.96■□□□□ 0.46
TNFP01375 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
TNFP01375 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.95■□□□□ 0.46
TNFP01375 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TNFP01375 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TNFP01375 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TNFP01375 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TNFP01375 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TNFP01375 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TNFP01375 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
TNFP01375 VENTXP7-201ENST00000475503 772 ntBASIC17.95■□□□□ 0.46
TNFP01375 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TNFP01375 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.95■□□□□ 0.46
TNFP01375 AL592071.1-201ENST00000611956 408 ntBASIC17.95■□□□□ 0.46
TNFP01375 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
TNFP01375 AC004263.2-201ENST00000617183 678 ntBASIC17.95■□□□□ 0.46
TNFP01375 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
TNFP01375 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TNFP01375 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
TNFP01375 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TNFP01375 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
TNFP01375 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
TNFP01375 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TNFP01375 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
TNFP01375 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.94■□□□□ 0.46
TNFP01375 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
TNFP01375 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
TNFP01375 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TNFP01375 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
TNFP01375 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
TNFP01375 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TNFP01375 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
TNFP01375 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.94■□□□□ 0.46
TNFP01375 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.94■□□□□ 0.46
TNFP01375 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
TNFP01375 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.94■□□□□ 0.46
TNFP01375 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TNFP01375 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.94■□□□□ 0.46
TNFP01375 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
TNFP01375 RN7SL606P-201ENST00000472779 293 ntBASIC17.94■□□□□ 0.46
TNFP01375 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.94■□□□□ 0.46
TNFP01375 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.94■□□□□ 0.46
TNFP01375 AC111152.3-201ENST00000569699 673 ntBASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms