Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC23.1■■□□□ 1.29
CACNA1FO60840 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC23.1■■□□□ 1.29
CACNA1FO60840 KRT18P65-201ENST00000439811 1286 ntBASIC23.1■■□□□ 1.29
CACNA1FO60840 AC091607.1-201ENST00000490318 1060 ntBASIC23.1■■□□□ 1.29
CACNA1FO60840 AL138831.2-201ENST00000606564 490 ntBASIC23.1■■□□□ 1.29
CACNA1FO60840 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
CACNA1FO60840 AC087289.5-201ENST00000586076 3175 ntBASIC23.09■■□□□ 1.29
CACNA1FO60840 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
CACNA1FO60840 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CACNA1FO60840 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CACNA1FO60840 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CACNA1FO60840 AL845331.1-201ENST00000424978 1190 ntBASIC23.09■■□□□ 1.29
CACNA1FO60840 VENTXP7-201ENST00000475503 772 ntBASIC23.09■■□□□ 1.29
CACNA1FO60840 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC23.09■■□□□ 1.29
CACNA1FO60840 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC23.09■■□□□ 1.29
CACNA1FO60840 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC23.09■■□□□ 1.29
CACNA1FO60840 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CACNA1FO60840 AC004408.2-201ENST00000623613 2777 ntBASIC23.09■■□□□ 1.29
CACNA1FO60840 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CACNA1FO60840 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CACNA1FO60840 FLYWCH1P1-201ENST00000460917 1874 ntBASIC23.09■■□□□ 1.29
CACNA1FO60840 CCS-201ENST00000310190 942 ntTSL 5 BASIC23.09■■□□□ 1.29
CACNA1FO60840 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CACNA1FO60840 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
CACNA1FO60840 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC23.09■■□□□ 1.29
CACNA1FO60840 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CACNA1FO60840 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CACNA1FO60840 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC23.09■■□□□ 1.29
CACNA1FO60840 AC090616.6-201ENST00000582640 721 ntBASIC23.09■■□□□ 1.29
CACNA1FO60840 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC23.09■■□□□ 1.29
CACNA1FO60840 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CACNA1FO60840 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CACNA1FO60840 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CACNA1FO60840 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CACNA1FO60840 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CACNA1FO60840 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CACNA1FO60840 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CACNA1FO60840 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CACNA1FO60840 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC23.08■■□□□ 1.29
CACNA1FO60840 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC23.08■■□□□ 1.29
CACNA1FO60840 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC23.08■■□□□ 1.29
CACNA1FO60840 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC23.08■■□□□ 1.29
CACNA1FO60840 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC23.08■■□□□ 1.29
CACNA1FO60840 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC23.08■■□□□ 1.29
CACNA1FO60840 TOB2P1-201ENST00000469761 992 ntBASIC23.08■■□□□ 1.29
CACNA1FO60840 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CACNA1FO60840 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC23.08■■□□□ 1.29
CACNA1FO60840 IFNL4P1-201ENST00000607083 540 ntBASIC23.08■■□□□ 1.29
CACNA1FO60840 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC23.08■■□□□ 1.29
CACNA1FO60840 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC23.08■■□□□ 1.29
CACNA1FO60840 AC124864.1-201ENST00000623408 392 ntBASIC23.08■■□□□ 1.29
CACNA1FO60840 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CACNA1FO60840 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC23.08■■□□□ 1.28
CACNA1FO60840 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC23.08■■□□□ 1.28
CACNA1FO60840 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.28
CACNA1FO60840 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
CACNA1FO60840 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC23.07■■□□□ 1.28
CACNA1FO60840 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
CACNA1FO60840 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
CACNA1FO60840 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC23.07■■□□□ 1.28
CACNA1FO60840 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CACNA1FO60840 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
CACNA1FO60840 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CACNA1FO60840 AL096828.2-201ENST00000567259 1965 ntBASIC23.07■■□□□ 1.28
CACNA1FO60840 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC23.07■■□□□ 1.28
CACNA1FO60840 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CACNA1FO60840 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CACNA1FO60840 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC23.07■■□□□ 1.28
CACNA1FO60840 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CACNA1FO60840 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CACNA1FO60840 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CACNA1FO60840 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC23.06■■□□□ 1.28
CACNA1FO60840 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC23.06■■□□□ 1.28
CACNA1FO60840 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC23.06■■□□□ 1.28
CACNA1FO60840 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
CACNA1FO60840 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CACNA1FO60840 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
CACNA1FO60840 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms