Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGN4O00479 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGN4O00479 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
HMGN4O00479 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGN4O00479 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGN4O00479 AL096828.2-201ENST00000567259 1965 ntBASIC17.15■□□□□ 0.34
HMGN4O00479 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 KRT8P7-201ENST00000533003 1432 ntBASIC17.14■□□□□ 0.33
HMGN4O00479 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 AC009102.3-201ENST00000623118 1491 ntBASIC17.14■□□□□ 0.33
HMGN4O00479 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.14■□□□□ 0.33
HMGN4O00479 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 KRT18P23-201ENST00000435622 1283 ntBASIC17.14■□□□□ 0.33
HMGN4O00479 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.14■□□□□ 0.33
HMGN4O00479 CCR12P-201ENST00000446203 998 ntBASIC17.14■□□□□ 0.33
HMGN4O00479 SNORA78-201ENST00000459373 127 ntBASIC17.14■□□□□ 0.33
HMGN4O00479 AL355075.4-201ENST00000554988 638 ntBASIC17.14■□□□□ 0.33
HMGN4O00479 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.14■□□□□ 0.33
HMGN4O00479 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.14■□□□□ 0.33
HMGN4O00479 PHGDH-209ENST00000641074 1780 ntBASIC17.14■□□□□ 0.33
HMGN4O00479 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.14■□□□□ 0.33
HMGN4O00479 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
HMGN4O00479 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGN4O00479 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.14■□□□□ 0.33
HMGN4O00479 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HMGN4O00479 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HMGN4O00479 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
HMGN4O00479 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
HMGN4O00479 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGN4O00479 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGN4O00479 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HMGN4O00479 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGN4O00479 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGN4O00479 MIR149-201ENST00000384879 89 ntBASIC17.13■□□□□ 0.33
HMGN4O00479 MIR1238-201ENST00000408483 83 ntBASIC17.13■□□□□ 0.33
HMGN4O00479 AC007663.1-201ENST00000438948 1240 ntBASIC17.13■□□□□ 0.33
HMGN4O00479 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.13■□□□□ 0.33
HMGN4O00479 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.13■□□□□ 0.33
HMGN4O00479 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGN4O00479 BX088651.1-201ENST00000540551 451 ntBASIC17.13■□□□□ 0.33
HMGN4O00479 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
HMGN4O00479 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HMGN4O00479 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGN4O00479 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGN4O00479 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HMGN4O00479 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGN4O00479 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGN4O00479 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGN4O00479 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGN4O00479 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGN4O00479 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGN4O00479 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGN4O00479 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGN4O00479 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGN4O00479 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGN4O00479 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
HMGN4O00479 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGN4O00479 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGN4O00479 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGN4O00479 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.12■□□□□ 0.33
HMGN4O00479 AP006294.2-201ENST00000641667 209 ntBASIC17.12■□□□□ 0.33
HMGN4O00479 AC116562.4-202ENST00000641738 218 ntBASIC17.12■□□□□ 0.33
HMGN4O00479 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGN4O00479 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms