Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
KDM3AQ9Y4C1 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
KDM3AQ9Y4C1 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
KDM3AQ9Y4C1 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
KDM3AQ9Y4C1 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
KDM3AQ9Y4C1 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
KDM3AQ9Y4C1 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC28.2■■■□□ 2.11
KDM3AQ9Y4C1 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC28.2■■■□□ 2.1
KDM3AQ9Y4C1 RNF126P1-201ENST00000567452 1320 ntBASIC28.2■■■□□ 2.1
KDM3AQ9Y4C1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
KDM3AQ9Y4C1 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
KDM3AQ9Y4C1 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
KDM3AQ9Y4C1 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
KDM3AQ9Y4C1 AC148477.6-201ENST00000623746 465 ntBASIC28.18■■■□□ 2.1
KDM3AQ9Y4C1 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
KDM3AQ9Y4C1 CHST11-203ENST00000547956 936 ntTSL 2 BASIC28.17■■■□□ 2.1
KDM3AQ9Y4C1 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
KDM3AQ9Y4C1 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
KDM3AQ9Y4C1 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
KDM3AQ9Y4C1 SHF-208ENST00000560734 1731 ntTSL 3 BASIC28.16■■■□□ 2.1
KDM3AQ9Y4C1 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
KDM3AQ9Y4C1 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
KDM3AQ9Y4C1 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
KDM3AQ9Y4C1 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
KDM3AQ9Y4C1 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
KDM3AQ9Y4C1 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
KDM3AQ9Y4C1 CEP120-209ENST00000515110 606 ntTSL 3 BASIC28.15■■■□□ 2.1
KDM3AQ9Y4C1 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
KDM3AQ9Y4C1 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
KDM3AQ9Y4C1 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
KDM3AQ9Y4C1 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
KDM3AQ9Y4C1 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
KDM3AQ9Y4C1 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.09
KDM3AQ9Y4C1 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC28.14■■■□□ 2.09
KDM3AQ9Y4C1 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
KDM3AQ9Y4C1 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC28.14■■■□□ 2.09
KDM3AQ9Y4C1 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC28.14■■■□□ 2.09
KDM3AQ9Y4C1 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC28.13■■■□□ 2.09
KDM3AQ9Y4C1 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
KDM3AQ9Y4C1 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC28.13■■■□□ 2.09
KDM3AQ9Y4C1 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
KDM3AQ9Y4C1 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
KDM3AQ9Y4C1 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
KDM3AQ9Y4C1 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
KDM3AQ9Y4C1 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC28.11■■■□□ 2.09
KDM3AQ9Y4C1 ABHD17AP5-201ENST00000580133 923 ntBASIC28.11■■■□□ 2.09
KDM3AQ9Y4C1 AC022413.1-201ENST00000624602 984 ntBASIC28.11■■■□□ 2.09
KDM3AQ9Y4C1 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC28.11■■■□□ 2.09
KDM3AQ9Y4C1 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC28.1■■■□□ 2.09
KDM3AQ9Y4C1 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
KDM3AQ9Y4C1 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
KDM3AQ9Y4C1 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC28.08■■■□□ 2.09
KDM3AQ9Y4C1 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC28.08■■■□□ 2.09
KDM3AQ9Y4C1 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC28.08■■■□□ 2.09
KDM3AQ9Y4C1 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC28.07■■■□□ 2.08
KDM3AQ9Y4C1 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC28.07■■■□□ 2.08
KDM3AQ9Y4C1 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC28.07■■■□□ 2.08
KDM3AQ9Y4C1 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC28.06■■■□□ 2.08
KDM3AQ9Y4C1 HES4-202ENST00000428771 1040 ntTSL 2 BASIC28.06■■■□□ 2.08
KDM3AQ9Y4C1 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC28.05■■■□□ 2.08
KDM3AQ9Y4C1 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC28.05■■■□□ 2.08
KDM3AQ9Y4C1 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
KDM3AQ9Y4C1 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
KDM3AQ9Y4C1 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
KDM3AQ9Y4C1 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC28.04■■■□□ 2.08
KDM3AQ9Y4C1 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
KDM3AQ9Y4C1 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
KDM3AQ9Y4C1 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
KDM3AQ9Y4C1 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
KDM3AQ9Y4C1 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
KDM3AQ9Y4C1 MIR219A2-201ENST00000608502 1504 ntBASIC28.03■■■□□ 2.08
KDM3AQ9Y4C1 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
KDM3AQ9Y4C1 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
KDM3AQ9Y4C1 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC28.02■■■□□ 2.08
KDM3AQ9Y4C1 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
KDM3AQ9Y4C1 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
KDM3AQ9Y4C1 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC28.01■■■□□ 2.07
KDM3AQ9Y4C1 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC28.01■■■□□ 2.07
KDM3AQ9Y4C1 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
KDM3AQ9Y4C1 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC28■■■□□ 2.07
KDM3AQ9Y4C1 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
KDM3AQ9Y4C1 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC28■■■□□ 2.07
KDM3AQ9Y4C1 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC28■■■□□ 2.07
KDM3AQ9Y4C1 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC28■■■□□ 2.07
KDM3AQ9Y4C1 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC28■■■□□ 2.07
KDM3AQ9Y4C1 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC27.99■■■□□ 2.07
KDM3AQ9Y4C1 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC27.99■■■□□ 2.07
KDM3AQ9Y4C1 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
KDM3AQ9Y4C1 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
KDM3AQ9Y4C1 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC27.99■■■□□ 2.07
KDM3AQ9Y4C1 AC060814.1-201ENST00000554326 538 ntBASIC27.98■■■□□ 2.07
KDM3AQ9Y4C1 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
KDM3AQ9Y4C1 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC27.98■■■□□ 2.07
KDM3AQ9Y4C1 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC27.97■■■□□ 2.07
KDM3AQ9Y4C1 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
KDM3AQ9Y4C1 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC27.97■■■□□ 2.07
KDM3AQ9Y4C1 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC27.97■■■□□ 2.07
KDM3AQ9Y4C1 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC27.97■■■□□ 2.07
KDM3AQ9Y4C1 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC27.97■■■□□ 2.07
KDM3AQ9Y4C1 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms