Protein–RNA interactions for Protein: Q8NEM2

SHCBP1, SHC SH2 domain-binding protein 1, humanhuman

Predictions only

Length 672 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1Q8NEM2 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC28.73■■■□□ 2.19
SHCBP1Q8NEM2 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SHCBP1Q8NEM2 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
SHCBP1Q8NEM2 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC28.73■■■□□ 2.19
SHCBP1Q8NEM2 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC28.73■■■□□ 2.19
SHCBP1Q8NEM2 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC28.73■■■□□ 2.19
SHCBP1Q8NEM2 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC28.72■■■□□ 2.19
SHCBP1Q8NEM2 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC28.72■■■□□ 2.19
SHCBP1Q8NEM2 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC28.72■■■□□ 2.19
SHCBP1Q8NEM2 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC28.72■■■□□ 2.19
SHCBP1Q8NEM2 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SHCBP1Q8NEM2 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
SHCBP1Q8NEM2 HES4-204ENST00000484667 667 ntTSL 3 BASIC28.71■■■□□ 2.19
SHCBP1Q8NEM2 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC28.71■■■□□ 2.19
SHCBP1Q8NEM2 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC28.7■■■□□ 2.19
SHCBP1Q8NEM2 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
SHCBP1Q8NEM2 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC28.7■■■□□ 2.19
SHCBP1Q8NEM2 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
SHCBP1Q8NEM2 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC28.7■■■□□ 2.18
SHCBP1Q8NEM2 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC28.69■■■□□ 2.18
SHCBP1Q8NEM2 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC28.68■■■□□ 2.18
SHCBP1Q8NEM2 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC28.68■■■□□ 2.18
SHCBP1Q8NEM2 RP9P-202ENST00000450133 1212 ntBASIC28.68■■■□□ 2.18
SHCBP1Q8NEM2 DUX4L18-201ENST00000553347 1267 ntBASIC28.68■■■□□ 2.18
SHCBP1Q8NEM2 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SHCBP1Q8NEM2 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC28.67■■■□□ 2.18
SHCBP1Q8NEM2 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SHCBP1Q8NEM2 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC28.67■■■□□ 2.18
SHCBP1Q8NEM2 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
SHCBP1Q8NEM2 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SHCBP1Q8NEM2 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
SHCBP1Q8NEM2 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
SHCBP1Q8NEM2 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
SHCBP1Q8NEM2 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC28.66■■■□□ 2.18
SHCBP1Q8NEM2 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC28.66■■■□□ 2.18
SHCBP1Q8NEM2 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC28.66■■■□□ 2.18
SHCBP1Q8NEM2 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
SHCBP1Q8NEM2 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
SHCBP1Q8NEM2 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
SHCBP1Q8NEM2 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC28.65■■■□□ 2.18
SHCBP1Q8NEM2 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
SHCBP1Q8NEM2 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC28.65■■■□□ 2.18
SHCBP1Q8NEM2 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC28.65■■■□□ 2.18
SHCBP1Q8NEM2 AL139393.2-201ENST00000608721 2025 ntBASIC28.65■■■□□ 2.18
SHCBP1Q8NEM2 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC28.65■■■□□ 2.18
SHCBP1Q8NEM2 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SHCBP1Q8NEM2 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC28.64■■■□□ 2.18
SHCBP1Q8NEM2 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.18
SHCBP1Q8NEM2 AP002414.2-202ENST00000590929 1450 ntBASIC28.64■■■□□ 2.17
SHCBP1Q8NEM2 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
SHCBP1Q8NEM2 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHCBP1Q8NEM2 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SHCBP1Q8NEM2 AC093536.1-201ENST00000569153 554 ntBASIC28.62■■■□□ 2.17
SHCBP1Q8NEM2 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC28.62■■■□□ 2.17
SHCBP1Q8NEM2 RAP2CP1-202ENST00000605179 643 ntBASIC28.62■■■□□ 2.17
SHCBP1Q8NEM2 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHCBP1Q8NEM2 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHCBP1Q8NEM2 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHCBP1Q8NEM2 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SHCBP1Q8NEM2 PFN2-211ENST00000489155 636 ntTSL 4 BASIC28.61■■■□□ 2.17
SHCBP1Q8NEM2 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
SHCBP1Q8NEM2 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC28.6■■■□□ 2.17
SHCBP1Q8NEM2 ABCB10P3-201ENST00000561950 2166 ntBASIC28.6■■■□□ 2.17
SHCBP1Q8NEM2 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
SHCBP1Q8NEM2 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC28.59■■■□□ 2.17
SHCBP1Q8NEM2 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SHCBP1Q8NEM2 DUX4L9-201ENST00000449051 1259 ntBASIC28.58■■■□□ 2.17
SHCBP1Q8NEM2 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC28.58■■■□□ 2.17
SHCBP1Q8NEM2 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC28.58■■■□□ 2.17
SHCBP1Q8NEM2 MIR3960-201ENST00000583311 91 ntBASIC28.57■■■□□ 2.16
SHCBP1Q8NEM2 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC28.57■■■□□ 2.16
SHCBP1Q8NEM2 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC28.57■■■□□ 2.16
SHCBP1Q8NEM2 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC28.57■■■□□ 2.16
SHCBP1Q8NEM2 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC28.56■■■□□ 2.16
SHCBP1Q8NEM2 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC28.56■■■□□ 2.16
SHCBP1Q8NEM2 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC28.55■■■□□ 2.16
SHCBP1Q8NEM2 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC28.55■■■□□ 2.16
SHCBP1Q8NEM2 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC28.55■■■□□ 2.16
SHCBP1Q8NEM2 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHCBP1Q8NEM2 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC28.54■■■□□ 2.16
SHCBP1Q8NEM2 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC28.54■■■□□ 2.16
SHCBP1Q8NEM2 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHCBP1Q8NEM2 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SHCBP1Q8NEM2 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC28.54■■■□□ 2.16
SHCBP1Q8NEM2 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC28.53■■■□□ 2.16
SHCBP1Q8NEM2 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC28.52■■■□□ 2.16
SHCBP1Q8NEM2 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC28.52■■■□□ 2.16
SHCBP1Q8NEM2 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC28.52■■■□□ 2.16
SHCBP1Q8NEM2 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC28.52■■■□□ 2.16
SHCBP1Q8NEM2 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.16
SHCBP1Q8NEM2 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC28.51■■■□□ 2.16
SHCBP1Q8NEM2 SPCS2P3-201ENST00000500401 656 ntBASIC28.51■■■□□ 2.15
SHCBP1Q8NEM2 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC28.51■■■□□ 2.15
SHCBP1Q8NEM2 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
SHCBP1Q8NEM2 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SHCBP1Q8NEM2 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
SHCBP1Q8NEM2 AC074183.2-201ENST00000623112 922 ntBASIC28.5■■■□□ 2.15
SHCBP1Q8NEM2 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC28.5■■■□□ 2.15
SHCBP1Q8NEM2 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC28.5■■■□□ 2.15
SHCBP1Q8NEM2 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms