Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC22.62■■□□□ 1.21
NIPAL3Q6P499 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
NIPAL3Q6P499 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
NIPAL3Q6P499 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
NIPAL3Q6P499 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
NIPAL3Q6P499 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC22.61■■□□□ 1.21
NIPAL3Q6P499 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC22.61■■□□□ 1.21
NIPAL3Q6P499 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC22.61■■□□□ 1.21
NIPAL3Q6P499 CHML-204ENST00000638121 920 ntTSL 2 BASIC22.61■■□□□ 1.21
NIPAL3Q6P499 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
NIPAL3Q6P499 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
NIPAL3Q6P499 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
NIPAL3Q6P499 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
NIPAL3Q6P499 AL449106.1-201ENST00000608517 1980 ntBASIC22.59■■□□□ 1.21
NIPAL3Q6P499 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NIPAL3Q6P499 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
NIPAL3Q6P499 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NIPAL3Q6P499 MIR7108-201ENST00000614319 87 ntBASIC22.59■■□□□ 1.21
NIPAL3Q6P499 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
NIPAL3Q6P499 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
NIPAL3Q6P499 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NIPAL3Q6P499 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
NIPAL3Q6P499 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC22.58■■□□□ 1.21
NIPAL3Q6P499 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NIPAL3Q6P499 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
NIPAL3Q6P499 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NIPAL3Q6P499 AC110285.7-201ENST00000624417 1536 ntBASIC22.57■■□□□ 1.2
NIPAL3Q6P499 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NIPAL3Q6P499 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
NIPAL3Q6P499 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC22.57■■□□□ 1.2
NIPAL3Q6P499 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NIPAL3Q6P499 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NIPAL3Q6P499 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NIPAL3Q6P499 DUX4L13-201ENST00000554103 1267 ntBASIC22.57■■□□□ 1.2
NIPAL3Q6P499 RNF166-209ENST00000567844 633 ntTSL 5 BASIC22.57■■□□□ 1.2
NIPAL3Q6P499 DUX4L15-201ENST00000611059 1267 ntBASIC22.57■■□□□ 1.2
NIPAL3Q6P499 DUX4L23-201ENST00000615195 1269 ntBASIC22.57■■□□□ 1.2
NIPAL3Q6P499 DUX4L24-201ENST00000617576 1269 ntBASIC22.57■■□□□ 1.2
NIPAL3Q6P499 DUX4L22-201ENST00000618238 1269 ntBASIC22.57■■□□□ 1.2
NIPAL3Q6P499 DUX4L20-201ENST00000619712 1269 ntBASIC22.57■■□□□ 1.2
NIPAL3Q6P499 DUX4L21-201ENST00000622058 1269 ntBASIC22.57■■□□□ 1.2
NIPAL3Q6P499 DUX4L10-201ENST00000622460 1267 ntBASIC22.57■■□□□ 1.2
NIPAL3Q6P499 DUX4L25-201ENST00000624915 1269 ntBASIC22.57■■□□□ 1.2
NIPAL3Q6P499 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
NIPAL3Q6P499 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
NIPAL3Q6P499 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
NIPAL3Q6P499 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NIPAL3Q6P499 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC22.56■■□□□ 1.2
NIPAL3Q6P499 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NIPAL3Q6P499 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NIPAL3Q6P499 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NIPAL3Q6P499 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.55■■□□□ 1.2
NIPAL3Q6P499 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC22.55■■□□□ 1.2
NIPAL3Q6P499 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NIPAL3Q6P499 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NIPAL3Q6P499 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NIPAL3Q6P499 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC22.54■■□□□ 1.2
NIPAL3Q6P499 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NIPAL3Q6P499 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NIPAL3Q6P499 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
NIPAL3Q6P499 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
NIPAL3Q6P499 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
NIPAL3Q6P499 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC22.53■■□□□ 1.2
NIPAL3Q6P499 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
NIPAL3Q6P499 AC091060.1-201ENST00000623524 1766 ntBASIC22.53■■□□□ 1.2
NIPAL3Q6P499 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC22.52■■□□□ 1.2
NIPAL3Q6P499 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
NIPAL3Q6P499 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
NIPAL3Q6P499 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
NIPAL3Q6P499 AGPS-202ENST00000409888 815 ntTSL 4 BASIC22.51■■□□□ 1.19
NIPAL3Q6P499 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
NIPAL3Q6P499 PVT1-219ENST00000523427 938 ntTSL 3 BASIC22.51■■□□□ 1.19
NIPAL3Q6P499 CHST11-202ENST00000546689 756 ntTSL 2 BASIC22.51■■□□□ 1.19
NIPAL3Q6P499 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC22.5■■□□□ 1.19
NIPAL3Q6P499 AC135731.1-201ENST00000569415 2548 ntBASIC22.5■■□□□ 1.19
NIPAL3Q6P499 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC22.5■■□□□ 1.19
NIPAL3Q6P499 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC22.5■■□□□ 1.19
NIPAL3Q6P499 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NIPAL3Q6P499 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC22.5■■□□□ 1.19
NIPAL3Q6P499 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NIPAL3Q6P499 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC22.49■■□□□ 1.19
NIPAL3Q6P499 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
NIPAL3Q6P499 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
NIPAL3Q6P499 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
NIPAL3Q6P499 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
NIPAL3Q6P499 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
NIPAL3Q6P499 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
NIPAL3Q6P499 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
NIPAL3Q6P499 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
NIPAL3Q6P499 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
NIPAL3Q6P499 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
NIPAL3Q6P499 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC22.47■■□□□ 1.19
NIPAL3Q6P499 CR559946.2-201ENST00000623684 991 ntBASIC22.47■■□□□ 1.19
NIPAL3Q6P499 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
NIPAL3Q6P499 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
NIPAL3Q6P499 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC22.47■■□□□ 1.19
NIPAL3Q6P499 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
NIPAL3Q6P499 HES6-205ENST00000409356 528 ntTSL 2 BASIC22.46■■□□□ 1.19
NIPAL3Q6P499 GDI1-215ENST00000630693 786 ntTSL 4 BASIC22.46■■□□□ 1.19
NIPAL3Q6P499 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms