Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC28.06■■■□□ 2.08
NKX3-2P78367 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
NKX3-2P78367 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC28.06■■■□□ 2.08
NKX3-2P78367 RP9P-202ENST00000450133 1212 ntBASIC28.05■■■□□ 2.08
NKX3-2P78367 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
NKX3-2P78367 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC28.05■■■□□ 2.08
NKX3-2P78367 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC28.05■■■□□ 2.08
NKX3-2P78367 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC28.05■■■□□ 2.08
NKX3-2P78367 DUX4L18-201ENST00000553347 1267 ntBASIC28.05■■■□□ 2.08
NKX3-2P78367 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC28.05■■■□□ 2.08
NKX3-2P78367 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC28.05■■■□□ 2.08
NKX3-2P78367 RAP2CP1-202ENST00000605179 643 ntBASIC28.05■■■□□ 2.08
NKX3-2P78367 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC28.04■■■□□ 2.08
NKX3-2P78367 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC28.04■■■□□ 2.08
NKX3-2P78367 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC28.04■■■□□ 2.08
NKX3-2P78367 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC28.04■■■□□ 2.08
NKX3-2P78367 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
NKX3-2P78367 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC28.03■■■□□ 2.08
NKX3-2P78367 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
NKX3-2P78367 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC28.03■■■□□ 2.08
NKX3-2P78367 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC28.03■■■□□ 2.08
NKX3-2P78367 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC28.03■■■□□ 2.08
NKX3-2P78367 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC28.03■■■□□ 2.08
NKX3-2P78367 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC28.02■■■□□ 2.08
NKX3-2P78367 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
NKX3-2P78367 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC28.02■■■□□ 2.08
NKX3-2P78367 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC28.02■■■□□ 2.08
NKX3-2P78367 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC28.02■■■□□ 2.08
NKX3-2P78367 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC28.01■■■□□ 2.08
NKX3-2P78367 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC28.01■■■□□ 2.07
NKX3-2P78367 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
NKX3-2P78367 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC28■■■□□ 2.07
NKX3-2P78367 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC28■■■□□ 2.07
NKX3-2P78367 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC27.99■■■□□ 2.07
NKX3-2P78367 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC27.99■■■□□ 2.07
NKX3-2P78367 PFN2-211ENST00000489155 636 ntTSL 4 BASIC27.99■■■□□ 2.07
NKX3-2P78367 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
NKX3-2P78367 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC27.99■■■□□ 2.07
NKX3-2P78367 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
NKX3-2P78367 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC27.98■■■□□ 2.07
NKX3-2P78367 DUX4L9-201ENST00000449051 1259 ntBASIC27.98■■■□□ 2.07
NKX3-2P78367 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
NKX3-2P78367 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC27.97■■■□□ 2.07
NKX3-2P78367 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
NKX3-2P78367 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC27.97■■■□□ 2.07
NKX3-2P78367 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC27.97■■■□□ 2.07
NKX3-2P78367 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
NKX3-2P78367 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
NKX3-2P78367 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC27.96■■■□□ 2.07
NKX3-2P78367 AC093536.1-201ENST00000569153 554 ntBASIC27.96■■■□□ 2.07
NKX3-2P78367 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
NKX3-2P78367 AC074183.2-201ENST00000623112 922 ntBASIC27.94■■■□□ 2.06
NKX3-2P78367 AL035685.1-201ENST00000636663 812 ntBASIC27.94■■■□□ 2.06
NKX3-2P78367 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC27.93■■■□□ 2.06
NKX3-2P78367 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC27.93■■■□□ 2.06
NKX3-2P78367 SPCS2P3-201ENST00000500401 656 ntBASIC27.93■■■□□ 2.06
NKX3-2P78367 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC27.93■■■□□ 2.06
NKX3-2P78367 AL451085.2-201ENST00000605085 799 ntBASIC27.93■■■□□ 2.06
NKX3-2P78367 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC27.93■■■□□ 2.06
NKX3-2P78367 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
NKX3-2P78367 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
NKX3-2P78367 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC27.92■■■□□ 2.06
NKX3-2P78367 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC27.92■■■□□ 2.06
NKX3-2P78367 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC27.92■■■□□ 2.06
NKX3-2P78367 MIR3960-201ENST00000583311 91 ntBASIC27.92■■■□□ 2.06
NKX3-2P78367 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC27.91■■■□□ 2.06
NKX3-2P78367 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC27.91■■■□□ 2.06
NKX3-2P78367 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
NKX3-2P78367 AP002414.2-202ENST00000590929 1450 ntBASIC27.9■■■□□ 2.06
NKX3-2P78367 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC27.9■■■□□ 2.06
NKX3-2P78367 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC27.9■■■□□ 2.06
NKX3-2P78367 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
NKX3-2P78367 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
NKX3-2P78367 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC27.9■■■□□ 2.06
NKX3-2P78367 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC27.9■■■□□ 2.06
NKX3-2P78367 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
NKX3-2P78367 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC27.87■■■□□ 2.05
NKX3-2P78367 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC27.87■■■□□ 2.05
NKX3-2P78367 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC27.86■■■□□ 2.05
NKX3-2P78367 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
NKX3-2P78367 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC27.86■■■□□ 2.05
NKX3-2P78367 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC27.86■■■□□ 2.05
NKX3-2P78367 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
NKX3-2P78367 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
NKX3-2P78367 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC27.85■■■□□ 2.05
NKX3-2P78367 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC27.85■■■□□ 2.05
NKX3-2P78367 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC27.85■■■□□ 2.05
NKX3-2P78367 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC27.85■■■□□ 2.05
NKX3-2P78367 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
NKX3-2P78367 AL139393.2-201ENST00000608721 2025 ntBASIC27.85■■■□□ 2.05
NKX3-2P78367 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27.84■■■□□ 2.05
NKX3-2P78367 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
NKX3-2P78367 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC27.84■■■□□ 2.05
NKX3-2P78367 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC27.84■■■□□ 2.05
NKX3-2P78367 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC27.84■■■□□ 2.05
NKX3-2P78367 TRIR-205ENST00000592273 783 ntTSL 3 BASIC27.84■■■□□ 2.05
NKX3-2P78367 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
NKX3-2P78367 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC27.84■■■□□ 2.05
NKX3-2P78367 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC27.84■■■□□ 2.05
NKX3-2P78367 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC27.83■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms