Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
BDNFP23560 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
BDNFP23560 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
BDNFP23560 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC26.5■■□□□ 1.83
BDNFP23560 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC26.5■■□□□ 1.83
BDNFP23560 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC26.5■■□□□ 1.83
BDNFP23560 AC018358.1-201ENST00000631079 1402 ntBASIC26.49■■□□□ 1.83
BDNFP23560 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
BDNFP23560 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
BDNFP23560 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.48■■□□□ 1.83
BDNFP23560 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
BDNFP23560 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
BDNFP23560 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
BDNFP23560 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
BDNFP23560 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
BDNFP23560 AC126177.7-201ENST00000547904 679 ntBASIC26.47■■□□□ 1.83
BDNFP23560 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
BDNFP23560 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC26.46■■□□□ 1.83
BDNFP23560 HES4-202ENST00000428771 1040 ntTSL 2 BASIC26.46■■□□□ 1.83
BDNFP23560 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
BDNFP23560 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
BDNFP23560 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.46■■□□□ 1.83
BDNFP23560 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.83
BDNFP23560 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
BDNFP23560 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
BDNFP23560 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
BDNFP23560 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC26.45■■□□□ 1.82
BDNFP23560 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC26.44■■□□□ 1.82
BDNFP23560 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
BDNFP23560 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
BDNFP23560 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
BDNFP23560 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC26.43■■□□□ 1.82
BDNFP23560 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
BDNFP23560 AL359258.2-201ENST00000564063 1566 ntBASIC26.42■■□□□ 1.82
BDNFP23560 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
BDNFP23560 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
BDNFP23560 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
BDNFP23560 AC092296.2-201ENST00000589470 999 ntBASIC26.41■■□□□ 1.82
BDNFP23560 SHF-206ENST00000560471 2499 ntTSL 5 BASIC26.4■■□□□ 1.82
BDNFP23560 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
BDNFP23560 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
BDNFP23560 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC26.39■■□□□ 1.81
BDNFP23560 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC26.38■■□□□ 1.81
BDNFP23560 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
BDNFP23560 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
BDNFP23560 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
BDNFP23560 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
BDNFP23560 MOB2-207ENST00000614710 705 ntTSL 5 BASIC26.37■■□□□ 1.81
BDNFP23560 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
BDNFP23560 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
BDNFP23560 AL157400.5-201ENST00000507624 621 ntBASIC26.36■■□□□ 1.81
BDNFP23560 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
BDNFP23560 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
BDNFP23560 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC26.35■■□□□ 1.81
BDNFP23560 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC26.34■■□□□ 1.81
BDNFP23560 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC26.34■■□□□ 1.81
BDNFP23560 ABHD17AP5-201ENST00000580133 923 ntBASIC26.34■■□□□ 1.81
BDNFP23560 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.34■■□□□ 1.81
BDNFP23560 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
BDNFP23560 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
BDNFP23560 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
BDNFP23560 ECEL1P2-201ENST00000461596 1295 ntBASIC26.33■■□□□ 1.81
BDNFP23560 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
BDNFP23560 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
BDNFP23560 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
BDNFP23560 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
BDNFP23560 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
BDNFP23560 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
BDNFP23560 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC26.32■■□□□ 1.8
BDNFP23560 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC26.32■■□□□ 1.8
BDNFP23560 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC26.32■■□□□ 1.8
BDNFP23560 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
BDNFP23560 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
BDNFP23560 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
BDNFP23560 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
BDNFP23560 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC26.3■■□□□ 1.8
BDNFP23560 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.3■■□□□ 1.8
BDNFP23560 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
BDNFP23560 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
BDNFP23560 LINC01003-201ENST00000564834 1764 ntBASIC26.29■■□□□ 1.8
BDNFP23560 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC26.29■■□□□ 1.8
BDNFP23560 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
BDNFP23560 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
BDNFP23560 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
BDNFP23560 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
BDNFP23560 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
BDNFP23560 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
BDNFP23560 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC26.27■■□□□ 1.8
BDNFP23560 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
BDNFP23560 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
BDNFP23560 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
BDNFP23560 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
BDNFP23560 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
BDNFP23560 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
BDNFP23560 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
BDNFP23560 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC26.25■■□□□ 1.79
BDNFP23560 WHAMMP3-201ENST00000611636 1609 ntBASIC26.25■■□□□ 1.79
BDNFP23560 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.24■■□□□ 1.79
BDNFP23560 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
BDNFP23560 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms