Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.72■□□□□ 0.75
SNX9Q9Y5X1 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.72■□□□□ 0.75
SNX9Q9Y5X1 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
SNX9Q9Y5X1 AC009102.3-201ENST00000623118 1491 ntBASIC19.72■□□□□ 0.75
SNX9Q9Y5X1 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SNX9Q9Y5X1 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 AC126763.1-201ENST00000552015 2118 ntBASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 AC091076.1-201ENST00000610741 619 ntBASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 AP000550.4-202ENST00000639755 178 ntBASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SNX9Q9Y5X1 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.71■□□□□ 0.74
SNX9Q9Y5X1 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.71■□□□□ 0.74
SNX9Q9Y5X1 IER3-202ENST00000376377 1350 ntBASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 AL645929.1-201ENST00000420084 975 ntBASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 AC004408.2-201ENST00000623613 2777 ntBASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SNX9Q9Y5X1 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 AC020763.4-201ENST00000623414 4170 ntBASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 AC116407.4-201ENST00000623319 1061 ntBASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 SDHAP2-201ENST00000455183 2001 ntBASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.69■□□□□ 0.74
SNX9Q9Y5X1 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.68■□□□□ 0.74
SNX9Q9Y5X1 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
SNX9Q9Y5X1 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
SNX9Q9Y5X1 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SNX9Q9Y5X1 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SNX9Q9Y5X1 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SNX9Q9Y5X1 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
SNX9Q9Y5X1 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SNX9Q9Y5X1 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SNX9Q9Y5X1 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SNX9Q9Y5X1 MIR662-201ENST00000384847 95 ntBASIC19.68■□□□□ 0.74
SNX9Q9Y5X1 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SNX9Q9Y5X1 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SNX9Q9Y5X1 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.68■□□□□ 0.74
SNX9Q9Y5X1 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms