Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 RCC2P3-201ENST00000418112 1537 ntBASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC28BQ9BUN5 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
CCDC28BQ9BUN5 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CCDC28BQ9BUN5 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 AC098934.4-201ENST00000564127 592 ntBASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 AL138781.1-201ENST00000566567 1274 ntBASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC28BQ9BUN5 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 AC046158.3-201ENST00000624947 2558 ntBASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC28BQ9BUN5 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms